RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 RBM45Q8IUH3 476 aaKnown RBP12.88□□□□□ -0.35
MCF2L-228ENST00000487354 SPICQ8N5J4 248 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 KIR3DL3Q8N743 410 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 GPR32P1Q8NGA4 272 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 OR6T1Q8NGN1 323 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 ASB10Q8WXI3 467 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 UPRTQ96BW1 309 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 MCHR1Q99705 422 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 MRI1Q9BV20 369 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 SPATA5L1Q9BVQ7 753 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 MS4A7Q9GZW8 240 aaPredicted RBP12.88□□□□□ -0.35
MCF2L-228ENST00000487354 LRMDAQ9H2I8 198 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 POFUT1Q9H488 388 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 CYSLTR2Q9NS75 346 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 VAPAQ9P0L0 249 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 ZNF229Q9UJW7 825 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 PLSCR5A0PG75 271 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 C5orf49A4QMS7 147 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 KPNA4O00629 521 aaPredicted RBP12.87□□□□□ -0.35
MCF2L-228ENST00000487354 HOXA3O43365 443 aaPredicted RBP12.87□□□□□ -0.35
MCF2L-228ENST00000487354 TRMUO75648 421 aaKnown RBP12.87□□□□□ -0.35
MCF2L-228ENST00000487354 OR6A2O95222 327 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 PPIAL4GP0DN37 164 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 UGT2B15P54855 530 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 PCBP3P57721 371 aaKnown RBP12.87□□□□□ -0.35
MCF2L-228ENST00000487354 CLRN1P58418 232 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 PPP1CBP62140 327 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 BTG1P62324 171 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 TNFAIP6P98066 277 aaPredicted RBP12.87□□□□□ -0.35
MCF2L-228ENST00000487354 PSG4Q00888 419 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 FMODQ06828 376 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 SCARB2Q14108 478 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 CEP85LQ5SZL2 805 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 HIST2H2BDQ6DRA6 164 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 KRT73Q86Y46 540 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 FUNDC1Q8IVP5 155 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 GOLGA6L1Q8N7Z2 621 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 SMYD1Q8NB12 490 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 OR52E2Q8NGJ4 325 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 ABHD4Q8TB40 342 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 DIRC2Q96SL1 478 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 WNT5BQ9H1J7 359 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 MMP27Q9H306 513 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 TMEM38AQ9H6F2 299 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 SIAEQ9HAT2 523 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 MEPEQ9NQ76 525 aaPredicted RBP12.87□□□□□ -0.35
MCF2L-228ENST00000487354 NANSQ9NR45 359 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 CGGBP1Q9UFW8 167 aaPredicted RBP12.87□□□□□ -0.35
MCF2L-228ENST00000487354 ZDHHC8Q9ULC8 765 aa12.87□□□□□ -0.35
MCF2L-228ENST00000487354 TRAV40A0A0B4J280 105 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 FAM181BA6NEQ2 426 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 PRORSD1PA6NEY8 169 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 CPSF4LA6NMK7 179 aaKnown RBP12.86□□□□□ -0.35
MCF2L-228ENST00000487354 CEACAM18A8MTB9 384 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 H3BSA7 217 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 THRBP10828 461 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 PCGF2P35227 344 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 ZNF84P51523 738 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 RPL18Q07020 188 aaKnown RBP12.86□□□□□ -0.35
MCF2L-228ENST00000487354 PSG7Q13046 419 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 DUSP7Q16829 419 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 KRT71Q3SY84 523 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 PAGE3Q5JUK9 113 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 ENTPD8Q5MY95 495 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 ARMC4Q5T2S8 1044 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 ARMC8Q8IUR7 673 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 KLHL36Q8N4N3 616 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 POU5F2Q8N7G0 328 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 PRSS27Q9BQR3 290 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 C1RLQ9NZP8 487 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 ZNF281Q9Y2X9 895 aa12.86□□□□□ -0.35
MCF2L-228ENST00000487354 CENPBD1B2RD01 187 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 SRRM5B3KS81 715 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 UBDO15205 165 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 RGS16O15492 202 aaPredicted RBP12.85□□□□□ -0.35
MCF2L-228ENST00000487354 KNG1P01042 644 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 F13BP05160 661 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 WNT2P09544 360 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 TSPAN19P0C672 248 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 ACADSP16219 412 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 GPX2P18283 190 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 LIPAP38571 399 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 MTNR1AP48039 350 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 MRPL19P49406 292 aaKnown RBP12.85□□□□□ -0.35
MCF2L-228ENST00000487354 RAG2P55895 527 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 ERVK-25P63136 954 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 DEFB112Q30KQ8 113 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 MTX3Q5HYI7 312 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 ASPHD2Q6ICH7 369 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 PTOV1Q86YD1 416 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 ADAMTS16Q8TE57 1224 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 HDAC2Q92769 488 aaKnown RBP12.85□□□□□ -0.35
MCF2L-228ENST00000487354 SAMD8Q96LT4 415 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 OR2H1Q9GZK4 316 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 EVA1AQ9H8M9 152 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 THAP1Q9NVV9 213 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 OR5V1Q9UGF6 321 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 LRCH1Q9Y2L9 728 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 NBEAL2Q6ZNJ1 2754 aa12.85□□□□□ -0.35
MCF2L-228ENST00000487354 IGHV2-70DA0A0C4DH43 119 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms