RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SMURF2Q9HAU4 748 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 MAN2C1Q9NTJ4 1040 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 TMEM38BQ9NVV0 291 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 KLHL21Q9UJP4 597 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 BAIAP2Q9UQB8 552 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 ADAM18Q9Y3Q7 739 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 LYVE1Q9Y5Y7 322 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 ABCA4P78363 2273 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 PRSS37A4D1T9 235 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 DPRXA6NFQ7 191 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 ATP6V1G2-DDX39BF2Z307 99 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 IDH3BO43837 385 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 AHCYL1O43865 530 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 FZD7O75084 574 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 SOX14O95416 240 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 IGHMP01871 453 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 ANXA8P13928 327 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 GCH1P30793 250 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 APOBEC3AP31941 199 aaPredicted RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 RAD52P43351 418 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 OMPP47874 163 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 NUDT6P53370 316 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 KRTAP10-9P60411 292 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 RPS7P62081 194 aaKnown RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 NKX6-1P78426 367 aaPredicted RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 FMODQ06828 376 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 SNTB2Q13425 540 aaKnown RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 RAB39AQ14964 217 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 FXNQ16595 210 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 MOGQ16653 247 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 RFX4Q33E94 735 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 SLC35F1Q5T1Q4 408 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 ZNF544Q6NX49 715 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 ZDHHC13Q8IUH4 622 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 MRPL41Q8IXM3 137 aaKnown RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 ACBD4Q8NC06 268 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 SLC30A7Q8NEW0 376 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 OR52E2Q8NGJ4 325 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 HDAC2Q92769 488 aaKnown RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 RASD2Q96D21 266 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 SAMD8Q96LT4 415 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 DHRS9Q9BPW9 319 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 RSPO3Q9BXY4 272 aaPredicted RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 CADM1Q9BY67 442 aaKnown RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 SYT4Q9H2B2 425 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 OR51B6Q9H340 312 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 SIAEQ9HAT2 523 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 BARX1Q9HBU1 254 aaPredicted RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 RPRD1BQ9NQG5 326 aaKnown RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 PLEK2Q9NYT0 353 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 H2AFY2Q9P0M6 372 aaPredicted RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 DNAJB9Q9UBS3 223 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 SLC7A8Q9UHI5 535 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 CMAHPQ9Y471 501 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 AP4S1Q9Y587 144 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 CDH10Q9Y6N8 788 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 ANKRD17O75179 2603 aaKnown RBP7.01□□□□□ -1.29
USP40-216ENST00000485943 ADGRG4Q8IZF6 3080 aa7.01□□□□□ -1.29
USP40-216ENST00000485943 CREBBPQ92793 2442 aa7□□□□□ -1.29
USP40-216ENST00000485943 IGHV1-18A0A0C4DH31 117 aa7□□□□□ -1.29
USP40-216ENST00000485943 TCRBV5S2A0A599 114 aa7□□□□□ -1.29
USP40-216ENST00000485943 PLSCR5A0PG75 271 aa7□□□□□ -1.29
USP40-216ENST00000485943 G3V2T6 193 aa7□□□□□ -1.29
USP40-216ENST00000485943 PDLIM1O00151 329 aa7□□□□□ -1.29
USP40-216ENST00000485943 CDC42EP2O14613 210 aa7□□□□□ -1.29
USP40-216ENST00000485943 IMPA2O14732 288 aa7□□□□□ -1.29
USP40-216ENST00000485943 DOK2O60496 412 aa7□□□□□ -1.29
USP40-216ENST00000485943 TIPRLO75663 272 aa7□□□□□ -1.29
USP40-216ENST00000485943 ALX3O95076 343 aa7□□□□□ -1.29
USP40-216ENST00000485943 PRSS23O95084 383 aa7□□□□□ -1.29
USP40-216ENST00000485943 PLAUP00749 431 aa7□□□□□ -1.29
USP40-216ENST00000485943 CECR9P0C854 216 aa7□□□□□ -1.29
USP40-216ENST00000485943 LAP3P28838 519 aa7□□□□□ -1.29
USP40-216ENST00000485943 CDAP32320 146 aa7□□□□□ -1.29
USP40-216ENST00000485943 HTR5AP47898 357 aa7□□□□□ -1.29
USP40-216ENST00000485943 NAAAQ02083 359 aa7□□□□□ -1.29
USP40-216ENST00000485943 KHDRBS1Q07666 443 aaKnown RBP eCLIP7□□□□□ -1.29
USP40-216ENST00000485943 COX10Q12887 443 aa7□□□□□ -1.29
USP40-216ENST00000485943 SEC23BQ15437 767 aa7□□□□□ -1.29
USP40-216ENST00000485943 NKPD1Q17RQ9 610 aa7□□□□□ -1.29
USP40-216ENST00000485943 C3orf36Q3SXR2 165 aa7□□□□□ -1.29
USP40-216ENST00000485943 NRN1LQ496H8 165 aa7□□□□□ -1.29
USP40-216ENST00000485943 PHYHD1Q5SRE7 291 aa7□□□□□ -1.29
USP40-216ENST00000485943 SHEQ5VZ18 495 aa7□□□□□ -1.29
USP40-216ENST00000485943 RGS7BPQ6MZT1 257 aaPredicted RBP7□□□□□ -1.29
USP40-216ENST00000485943 C1orf94Q6P1W5 598 aa7□□□□□ -1.29
USP40-216ENST00000485943 ZFP1Q6P2D0 407 aa7□□□□□ -1.29
USP40-216ENST00000485943 PGBD2Q6P3X8 592 aa7□□□□□ -1.29
USP40-216ENST00000485943 SEZ6L2Q6UXD5 910 aa7□□□□□ -1.29
USP40-216ENST00000485943 ZER1Q7Z7L7 766 aa7□□□□□ -1.29
USP40-216ENST00000485943 HIPK1Q86Z02 1210 aa7□□□□□ -1.29
USP40-216ENST00000485943 GLB1L2Q8IW92 636 aa7□□□□□ -1.29
USP40-216ENST00000485943 WDR31Q8NA23 367 aa7□□□□□ -1.29
USP40-216ENST00000485943 SDR9C7Q8NEX9 313 aa7□□□□□ -1.29
USP40-216ENST00000485943 OR4C15Q8NGM1 316 aa7□□□□□ -1.29
USP40-216ENST00000485943 OR6K6Q8NGW6 343 aa7□□□□□ -1.29
USP40-216ENST00000485943 OR2T4Q8NH00 348 aa7□□□□□ -1.29
USP40-216ENST00000485943 OR4K13Q8NH42 304 aa7□□□□□ -1.29
USP40-216ENST00000485943 DNAJC9Q8WXX5 260 aa7□□□□□ -1.29
USP40-216ENST00000485943 C11orf40Q8WZ69 217 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms