RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MYO7AQ13402 2215 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 ACTL6AO96019 429 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 CD74P04233 296 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 HEXAP06865 529 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 FBXO45P0C2W1 286 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 DRD3P35462 400 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 AQP2P41181 271 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 MEF2DQ14814 521 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 ITPRIPL2Q3MIP1 535 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 UNQ6126/PRO20091Q6UXV3 157 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 LYG2Q86SG7 212 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 CACUL1Q86Y37 369 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 PRSS35Q8N3Z0 413 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 RNF141Q8WVD5 230 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 PHB2Q99623 299 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 PTDSS2Q9BVG9 487 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 MYEF2Q9P2K5 600 aaKnown RBP12.02□□□□□ -0.49
USP40-214ENST00000483519 SLC17A4Q9Y2C5 497 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 TVP23AA6NH52 213 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 EIF1AYO14602 144 aaKnown RBP12.02□□□□□ -0.49
USP40-214ENST00000483519 ZNF735P0CB33 412 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 EIF1AXP47813 144 aaKnown RBP12.02□□□□□ -0.49
USP40-214ENST00000483519 PSG6Q00889 435 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 HYAL1Q12794 435 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 FAM53BQ14153 422 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 KCNAB1Q14722 419 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 ZNF141Q15928 474 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 AGBL4Q5VU57 503 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 TMEM184AQ6ZMB5 413 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 TMEM52Q8NDY8 209 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 OR5AP2Q8NGF4 316 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 PIK3IP1Q96FE7 263 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 PRRT1Q99946 306 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 LMF2Q9BU23 707 aaKnown RBP12.02□□□□□ -0.49
USP40-214ENST00000483519 IGFLR1Q9H665 355 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 SRA1Q9HD15 236 aaKnown RBP12.02□□□□□ -0.49
USP40-214ENST00000483519 TREM1Q9NP99 234 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 MMP26Q9NRE1 261 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 FARSAQ9Y285 508 aaKnown RBP12.02□□□□□ -0.49
USP40-214ENST00000483519 HIF3AQ9Y2N7 669 aa12.02□□□□□ -0.49
USP40-214ENST00000483519 C4orf47A7E2U8 309 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 CEBPBP17676 345 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ALOX5APP20292 161 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 CTXN1P60606 82 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ELOCQ15369 112 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ALG11Q2TAA5 492 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ALG10Q5BKT4 473 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 FAM166AQ6J272 317 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 SLC25A42Q86VD7 318 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 C10orf53Q8N6V4 93 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 UCN2Q96RP3 112 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 CMSS1Q9BQ75 279 aaKnown RBP12.01□□□□□ -0.49
USP40-214ENST00000483519 TLNRD1Q9H1K6 362 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 SRMSQ9H3Y6 488 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 TMEM100Q9NV29 134 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 OBP2AQ9NY56 170 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 CKLFQ9UBR5 152 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 EDARQ9UNE0 448 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 SCN2AQ99250 2005 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 A0A0A6YYH2 397 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 A6NJ64 397 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 OR10H2O60403 315 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ALOX12BO75342 701 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 CSTAP01040 98 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 IGKV1D-16P01601 117 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 CRYBA1P05813 215 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 DCNP07585 359 aaKnown RBP12.01□□□□□ -0.49
USP40-214ENST00000483519 CD79AP11912 226 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ZBTB25P24278 435 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 KIR3DL2P43630 455 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ADAM8P78325 824 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 NAAAQ02083 359 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 DMWDQ09019 674 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 PDZK1IP1Q13113 114 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 ENPP2Q13822 863 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 WDR38Q5JTN6 314 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 IL34Q6ZMJ4 242 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 DPY19L4Q7Z388 723 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 SFTPA1Q8IWL2 248 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 TMEFF1Q8IYR6 380 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 LINC00469Q8N7U9 141 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 OR13C8Q8NGS7 320 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 FOXRED1Q96CU9 486 aaPredicted RBP12.01□□□□□ -0.49
USP40-214ENST00000483519 SLC41A2Q96JW4 573 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 LMF1Q96S06 567 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 SLC2A8Q9NY64 477 aa12.01□□□□□ -0.49
USP40-214ENST00000483519 EML5Q05BV3 1969 aa12□□□□□ -0.49
USP40-214ENST00000483519 OR6C76A6NM76 312 aa12□□□□□ -0.49
USP40-214ENST00000483519 F8VVB4 439 aa12□□□□□ -0.49
USP40-214ENST00000483519 F8VWA3 439 aa12□□□□□ -0.49
USP40-214ENST00000483519 LINC01387J3KSC0 135 aa12□□□□□ -0.49
USP40-214ENST00000483519 CYR61O00622 381 aa12□□□□□ -0.49
USP40-214ENST00000483519 ZNF208O43345 1280 aa12□□□□□ -0.49
USP40-214ENST00000483519 CTSVO60911 334 aa12□□□□□ -0.49
USP40-214ENST00000483519 TACR3P29371 465 aa12□□□□□ -0.49
USP40-214ENST00000483519 KCNJ3P48549 501 aa12□□□□□ -0.49
USP40-214ENST00000483519 AIMP2Q13155 320 aaKnown RBP12□□□□□ -0.49
USP40-214ENST00000483519 EMC4Q5J8M3 183 aa12□□□□□ -0.49
USP40-214ENST00000483519 PAPD4Q6PIY7 484 aaKnown RBP12□□□□□ -0.49
USP40-214ENST00000483519 ZNF584Q8IVC4 421 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms