RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 KCTD8Q6ZWB6 473 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 SSX8Q7RTT4 187 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 CDC20BQ86Y33 519 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 ERI1Q8IV48 349 aaKnown RBP8.97□□□□□ -0.97
USP39-215ENST00000481409 C9orf106Q8NAJ2 232 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 C1orf162Q8NEQ5 155 aaPredicted RBP8.97□□□□□ -0.97
USP39-215ENST00000481409 RORBQ92753 470 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 FOXB1Q99853 325 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 CDADC1Q9BWV3 514 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 RBM24Q9BX46 236 aaKnown RBP8.97□□□□□ -0.97
USP39-215ENST00000481409 KCNN2Q9H2S1 579 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 CRLF2Q9HC73 371 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 TMEM38BQ9NVV0 291 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 ERVK13-1Q9NX77 482 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 LAMP5Q9UJQ1 280 aa8.97□□□□□ -0.97
USP39-215ENST00000481409 PHF3Q92576 2039 aaKnown RBP8.97□□□□□ -0.97
USP39-215ENST00000481409 A0A1W2PPL8 197 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 UPK3AO75631 287 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 TFP02787 698 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 MT-ND5P03915 603 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 CST2P09228 141 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 LIMS3P0CW19 117 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 LIMS4P0CW20 117 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ATP6V1B1P15313 513 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 DCTDP32321 178 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 NTF4P34130 210 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 CA7P43166 264 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 CDH15P55291 814 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ROR2Q01974 943 aaKnown RBP8.96□□□□□ -0.98
USP39-215ENST00000481409 ROM1Q03395 351 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 AQP6Q13520 282 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 GPR50Q13585 617 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 P2RY6Q15077 328 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 SPHARQ15513 63 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ETFDHQ16134 617 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 CDONQ4KMG0 1287 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 CCDC58Q4VC31 144 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 OR7E24Q6IFN5 339 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ZNF544Q6NX49 715 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 MTFR2Q6P444 385 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 TFAP2EQ6VUC0 442 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 SEM1Q6ZVN7 128 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 NUFIP2Q7Z417 695 aaKnown RBP8.96□□□□□ -0.98
USP39-215ENST00000481409 WDFY1Q8IWB7 410 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ZNF511Q8NB15 262 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 GJC3Q8NFK1 279 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 OR10H4Q8NGA5 316 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 OR4F15Q8NGB8 312 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 OR51L1Q8NGJ5 315 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 OR6N2Q8NGY6 317 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 OR2AJ1Q8NGZ0 328 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 SNX33Q8WV41 574 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 C11orf40Q8WZ69 217 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 NSMAFQ92636 917 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ZNF649Q9BS31 505 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ALG8Q9BVK2 526 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 MROQ9BYG7 248 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 C1orf198Q9H425 327 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 RERGLQ9H628 205 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 NIPAL2Q9H841 368 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 SEC61A2Q9H9S3 476 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 OBP2BQ9NPH6 170 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 SLC7A10Q9NS82 523 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 MRPL22Q9NWU5 206 aaKnown RBP8.96□□□□□ -0.98
USP39-215ENST00000481409 TAS2R16Q9NYV7 291 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 CYB5R1Q9UHQ9 305 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 ATPIF1Q9UII2 106 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 PROCRQ9UNN8 238 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 UGT2A1Q9Y4X1 527 aa8.96□□□□□ -0.98
USP39-215ENST00000481409 MED12LQ86YW9 2145 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 DOCK7Q96N67 2140 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 IGKV1D-43A0A0B4J1Z2 117 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 A0A1W2PQL4 384 aaPredicted RBP8.95□□□□□ -0.98
USP39-215ENST00000481409 FAM171A2A8MVW0 826 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 MSTNO14793 375 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 SELENOFO60613 162 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 TNFSF13O75888 250 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 CGAP01215 116 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 APOC1P02654 83 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 TFAP2AP05549 437 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 CD1AP06126 327 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 GLI4P10075 376 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 CD53P19397 219 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 ALDH3B2P48448 385 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 ETV1P50549 477 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 SCRN3Q0VDG4 424 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 NFATC3Q12968 1075 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 ECH1Q13011 328 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 MLLT11Q13015 90 aaPredicted RBP8.95□□□□□ -0.98
USP39-215ENST00000481409 CEACAM16Q2WEN9 425 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 PHYHD1Q5SRE7 291 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 XAF1Q6GPH4 301 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 ANKRD16Q6P6B7 361 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 ZNF322Q6U7Q0 402 aaPredicted RBP8.95□□□□□ -0.98
USP39-215ENST00000481409 DPY19L4Q7Z388 723 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 FAM220AQ7Z4H9 259 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 LSRQ86X29 649 aaPredicted RBP8.95□□□□□ -0.98
USP39-215ENST00000481409 ZNF679Q8IYX0 411 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 UBE2J2Q8N2K1 259 aa8.95□□□□□ -0.98
USP39-215ENST00000481409 C17orf78Q8N4C9 275 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms