RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 WDFY1Q8IWB7 410 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 MICU2Q8IYU8 434 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 LRRC17Q8N6Y2 441 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 OR2T12Q8NG77 320 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 RP9Q8TA86 221 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 C10orf105Q8TEF2 133 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM255BQ8WV15 326 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM239Q8WW34 195 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 LZICQ8WZA0 190 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM54Q969K7 222 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 RCN3Q96D15 328 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC25A44Q96H78 314 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 TPD52L3Q96J77 140 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 TNFRSF13CQ96RJ3 184 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 VRK1Q99986 396 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 PRSS27Q9BQR3 290 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 PIMREGQ9BSJ6 248 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 RAB1BQ9H0U4 201 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 NOX3Q9HBY0 568 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 MEPEQ9NQ76 525 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 YAE1D1Q9NRH1 226 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 B3GNT2Q9NY97 397 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 ARMCX1Q9P291 453 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 RIMS3Q9UJD0 308 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 FBXL3Q9UKT7 428 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 MED31Q9Y3C7 131 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 SPEF1Q9Y4P9 236 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 DMRT1Q9Y5R6 373 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 MALRD1Q5VYJ5 2156 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 JMJD1CQ15652 2540 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 A0A096LNT2 108 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 LOC390937A0A1W2PQ73 354 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 HTR3EA5X5Y0 456 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 CENPBD1B2RD01 187 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 MCIDASD6RGH6 385 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 BLOC1S5-TXNDC5H3BN57 136 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 hCG_2039718K7EN88 272 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 DHHO43323 396 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 SHOX2O60902 331 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 LY6HO94772 140 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 FARS2O95363 451 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 BCL10O95999 233 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 PGA4P0DJD7 388 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 PGA3P0DJD8 388 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 OR8G3PP0DMU2 310 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 FUT1P19526 365 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 USF1P22415 310 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 NR4A1P22736 598 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 LSP1P33241 339 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 MDH1P40925 334 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 OR1E2P47887 323 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 DAP3P51398 398 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 UGT2B15P54855 530 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 CLRN1P58418 232 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 RAB1AP62820 205 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 SELENOWP63302 87 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 VLDLRP98155 873 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 GALK2Q01415 458 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 COL10A1Q03692 680 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 RPL18Q07020 188 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 PIGFQ07326 219 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 ST3GAL3Q11203 375 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 SNTB2Q13425 540 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 PIN1Q13526 163 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 DAG1Q14118 895 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM249Q2WGJ8 235 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 CYBRD1Q53TN4 286 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 GKAP1Q5VSY0 366 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 KRT80Q6KB66 452 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 SPATA21Q7Z572 469 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 DPPA2Q7Z7J5 298 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 NKAIN4Q8IVV8 208 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 SVOPLQ8N434 492 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC22A24Q8N4F4 322 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 NOXO1Q8NFA2 376 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 PFN4Q8NHR9 129 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 SGTBQ96EQ0 304 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 PRRC1Q96M27 445 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF75AQ96N20 296 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 DYNLRB1Q9NP97 96 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 INIPQ9NRY2 104 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 C20orf141Q9NUB4 165 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF224Q9NZL3 707 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 STX18Q9P2W9 335 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 CMAHPQ9Y471 501 aa5.86□□□□□ -1.47
CCDC88A-213ENST00000476903 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 A8MV72 311 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 VWC2LB2RUY7 222 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 NDUFAB1O14561 156 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 GSTA4O15217 222 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 GPRIN2O60269 458 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 IFNW1P05000 195 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 SERPINA5P05154 406 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 QDPRP09417 244 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 NR2C1P13056 603 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 COX4I1P13073 169 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF35P13682 527 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 ACADSP16219 412 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 AQP2P41181 271 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 NR4A2P43354 598 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms