RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	OR51B6	Q9H340	312 aa		20.71	■□□□□ 0.91
CPNE1-223	ENST00000475146	RERGL	Q9H628	205 aa		20.71	■□□□□ 0.91
CPNE1-223	ENST00000475146	VPS13C	Q709C8	3753 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	TMEM129	A0AVI4	362 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	AHCYL1	O43865	530 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	KRT36	O76013	467 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	CSF3	P09919	207 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	MSR1	P21757	451 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	FPR3	P25089	353 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	APEX1	P27695	318 aa	Known RBP	20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	RPS6KA3	P51812	740 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	MSMP	Q1L6U9	139 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	FOXL2NB	Q6ZUU3	175 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	MRPL37	Q9BZE1	423 aa	Known RBP	20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	RAB1B	Q9H0U4	201 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	MAGIX	Q9H6Y5	334 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	FZR1	Q9UM11	496 aa		20.7	■□□□□ 0.9
CPNE1-223	ENST00000475146	TNFRSF11B	O00300	401 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	UBOX5	O94941	541 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	PPP1R3D	O95685	299 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	ERCC1	P07992	297 aa	Predicted RBP	20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	CST2	P09228	141 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	CCNO	P22674	350 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	SLC6A6	P31641	620 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	CARTPT	Q16568	116 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	FAM98B	Q52LJ0	330 aa	Known RBP	20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	ADCK1	Q86TW2	530 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	CPEB3	Q8NE35	698 aa	Known RBP	20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	OR10H5	Q8NGA6	315 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	AKR7L	Q8NHP1	331 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	GNPDA2	Q8TDQ7	276 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	ASB9	Q96DX5	294 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	FOXN4	Q96NZ1	517 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	SYT4	Q9H2B2	425 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	OR52D1	Q9H346	318 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	POLE4	Q9NR33	117 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	LYVE1	Q9Y5Y7	322 aa		20.69	■□□□□ 0.9
CPNE1-223	ENST00000475146	SNAP29	O95721	258 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	CTLA4	P16410	223 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	MAGEA2	P43356	314 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	PCBD1	P61457	104 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	RGS7BP	Q6MZT1	257 aa	Predicted RBP	20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	PGBD2	Q6P3X8	592 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	ICA1L	Q8NDH6	482 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	ERMAP	Q96PL5	475 aa	Predicted RBP	20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	OR2H1	Q9GZK4	316 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	EMC7	Q9NPA0	242 aa		20.68	■□□□□ 0.9
CPNE1-223	ENST00000475146	C12orf71	A8MTZ7	269 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146		M0R233	179 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	SLC16A7	O60669	478 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	LCK	P06239	509 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	ADRA2A	P08913	450 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	STOM	P27105	288 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	GSS	P48637	474 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	EVX1	P49640	407 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	PDLIM4	P50479	330 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	PSG4	Q00888	419 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	ENDOG	Q14249	297 aa	Known RBP	20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	RFX4	Q33E94	735 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	C1orf94	Q6P1W5	598 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	ZCCHC24	Q8N2G6	241 aa	Known RBP	20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	OR9Q2	Q8NGE9	314 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	C10orf105	Q8TEF2	133 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	IFT27	Q9BW83	186 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	ZNF416	Q9BWM5	594 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	TRIM15	Q9C019	465 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	VSX1	Q9NZR4	365 aa	Predicted RBP	20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	DUSP13	Q9UII6	198 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146	TIMM10B	Q9Y5J6	103 aa		20.67	■□□□□ 0.9
CPNE1-223	ENST00000475146		A0A1W2PPW3	197 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	IMPA2	O14732	288 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	GYG2	O15488	501 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	SYNGR3	O43761	229 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	KHDRBS3	O75525	346 aa	Known RBP	20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	TXNDC12	O95881	172 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	SCG5	P05408	212 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	APEH	P13798	732 aa	Known RBP	20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	SLC25A16	P16260	332 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	RAD52	P43351	418 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	GDI2	P50395	445 aa	Known RBP	20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	TSPAN31	Q12999	210 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	DNAL1	Q4LDG9	190 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	UGT2A3	Q6UWM9	527 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	PTCHD4	Q6ZW05	846 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	LRP11	Q86VZ4	500 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	JAZF1	Q86VZ6	243 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	ALDH16A1	Q8IZ83	802 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	POP5	Q969H6	163 aa	Known RBP	20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	SAMD8	Q96LT4	415 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	WNT5B	Q9H1J7	359 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	TPK1	Q9H3S4	243 aa		20.66	■□□□□ 0.9
CPNE1-223	ENST00000475146	C5orf49	A4QMS7	147 aa		20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	CCNB2	O95067	398 aa		20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	NOS3	P29474	1203 aa		20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	CDKN2A	P42771	156 aa	Known RBP	20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	HMGA2	P52926	109 aa		20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	ERVS71-1	P61550	626 aa		20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	ZNF774	Q6NX45	483 aa		20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	ZNF620	Q6ZNG0	422 aa		20.65	■□□□□ 0.9
CPNE1-223	ENST00000475146	LINC00471	Q8N535	108 aa		20.65	■□□□□ 0.9

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms