RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 ZNF3P17036 446 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 IGFBP2P18065 325 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 PSMB1P20618 241 aaKnown RBP8.64□□□□□ -1.03
SF3A1-207ENST00000471342 LOXP28300 417 aaPredicted RBP8.64□□□□□ -1.03
SF3A1-207ENST00000471342 MPGP29372 298 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 CDH11P55287 796 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 CDH15P55291 814 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 RBPJQ06330 500 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 FAPQ12884 760 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 HSPB2Q16082 182 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 NRN1LQ496H8 165 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 MEDAGQ5VYS4 303 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 RNLSQ5VYX0 342 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 CFAP77Q6ZQR2 320 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 PRSS45Q7RTY3 260 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 P4HA3Q7Z4N8 544 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 ATCAYQ86WG3 371 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 FOXB1Q99853 325 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 SH3GL3Q99963 347 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 APOL4Q9BPW4 351 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 ZNF416Q9BWM5 594 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 ULBP2Q9BZM5 246 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 WNT5BQ9H1J7 359 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 VCXQ9H320 206 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 ZNF696Q9H7X3 374 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 SEC61A2Q9H9S3 476 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 PARPBPQ9NWS1 579 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 ERVK-18Q9QC07 812 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 WARS2Q9UGM6 360 aaKnown RBP8.64□□□□□ -1.03
SF3A1-207ENST00000471342 LRCH1Q9Y2L9 728 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 PCNX1Q96RV3 2341 aa8.64□□□□□ -1.03
SF3A1-207ENST00000471342 A0A1W2PQL4 384 aaPredicted RBP8.63□□□□□ -1.03
SF3A1-207ENST00000471342 C19orf84I3L1E1 186 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SIAH2O43255 324 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 MPZL2O60487 215 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 ZG16O60844 167 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 LALBAP00709 142 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 RENP00797 406 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 PLA2G2AP14555 144 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CRYGSP22914 178 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 OTX1P32242 354 aaPredicted RBP8.63□□□□□ -1.03
SF3A1-207ENST00000471342 MTNR1AP48039 350 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 ETV1P50549 477 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CLRN1P58418 232 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 TMED1Q13445 227 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SF3B4Q15427 424 aaKnown RBP eCLIP8.63□□□□□ -1.031e-6■■■□□ 16.5
SF3A1-207ENST00000471342 HIKESHIQ53FT3 197 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SFRP5Q5T4F7 317 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 C9orf135Q5VTT2 229 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 XAF1Q6GPH4 301 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CORO6Q6QEF8 472 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 KLHL24Q6TFL4 600 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 MRGPRGQ86SM5 289 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 JAZF1Q86VZ6 243 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CXorf67Q86X51 503 aaPredicted RBP8.63□□□□□ -1.03
SF3A1-207ENST00000471342 GLB1L2Q8IW92 636 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 GPR137CQ8N3F9 429 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SLC22A24Q8N4F4 322 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CNEP1R1Q8N9A8 125 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SETD9Q8NE22 299 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CPEB3Q8NE35 698 aaKnown RBP8.63□□□□□ -1.03
SF3A1-207ENST00000471342 BPIFB6Q8NFQ5 453 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 OR6N1Q8NGY5 312 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 OR2T4Q8NH00 348 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 OTOSQ8NHW6 89 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 RND1Q92730 232 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 RNFT2Q96EX2 444 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 RBP7Q96R05 134 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CDCA4Q9BXL8 241 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SIAEQ9HAT2 523 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CNOT2Q9NZN8 540 aaKnown RBP8.63□□□□□ -1.03
SF3A1-207ENST00000471342 NPAP1Q9NZP6 1156 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 CRNNQ9UBG3 495 aaPredicted RBP8.63□□□□□ -1.03
SF3A1-207ENST00000471342 KCNG2Q9UJ96 466 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 EMC9Q9Y3B6 208 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SLC25A15Q9Y619 301 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 SIRT4Q9Y6E7 314 aaPredicted RBP8.63□□□□□ -1.03
SF3A1-207ENST00000471342 COL12A1Q99715 3063 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 MYO7BQ6PIF6 2116 aa8.63□□□□□ -1.03
SF3A1-207ENST00000471342 DOPEY1Q5JWR5 2465 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 ESPL1Q14674 2120 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 LOC100509620A0A075B734 347 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 ARPC4-TTLL3A0A0A6YYG9 625 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 OR6C65A6NJZ3 312 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 E9PI62 339 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 XKRYO14609 159 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 SMNDC1O75940 238 aaKnown RBP eCLIP8.62□□□□□ -1.03
SF3A1-207ENST00000471342 LYZL6O75951 148 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 IFNGP01579 166 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 IGLV1-44P01699 117 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 CDK1P06493 297 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 B4GALT1P15291 398 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 BMP5P22003 454 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 CRABP1P29762 137 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 CHRNB4P30926 498 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 LSM6P62312 80 aaKnown RBP8.62□□□□□ -1.03
SF3A1-207ENST00000471342 PSG4Q00888 419 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 ROM1Q03395 351 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 MED21Q13503 144 aa8.62□□□□□ -1.03
SF3A1-207ENST00000471342 TBRG1Q3YBR2 411 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms