RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SMURF2Q9HAU4 748 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 STX18Q9P2W9 335 aaKnown RBP13.67□□□□□ -0.22
COL7A1-204ENST00000462475 RIMS3Q9UJD0 308 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 BAG5Q9UL15 447 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 A0A0G2JND7 137 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 NPIPB13A6NJU9 1138 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 NPIPB4C9JG80 1138 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 GCH1P30793 250 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 GDI2P50395 445 aaKnown RBP13.66□□□□□ -0.22
COL7A1-204ENST00000462475 PSG4Q00888 419 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 LAPTM4AQ15012 233 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 ZNF718Q3SXZ3 478 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 FAM209AQ5JX71 171 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 TEX29Q8N6K0 151 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 KLF14Q8TD94 323 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-204ENST00000462475 CCL17Q92583 94 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 TIMD4Q96H15 378 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 MAGEB18Q96M61 343 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 SLC6A7Q99884 636 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 GAL3ST1Q99999 423 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 OR2J1Q9GZK6 312 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 POLR2J2Q9GZM3 115 aaKnown RBP13.66□□□□□ -0.22
COL7A1-204ENST00000462475 POLR2J3Q9H1A7 115 aaKnown RBP13.66□□□□□ -0.22
COL7A1-204ENST00000462475 TXNIPQ9H3M7 391 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 MED31Q9Y3C7 131 aa13.66□□□□□ -0.22
COL7A1-204ENST00000462475 TMEM89A2RUT3 159 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 TRIM77I1YAP6 450 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 EDF1O60869 148 aaKnown RBP13.65□□□□□ -0.22
COL7A1-204ENST00000462475 UBOX5O94941 541 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 CYLC2Q14093 348 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-204ENST00000462475 SPRNQ5BIV9 151 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 ALG10Q5BKT4 473 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 DCAF12L2Q5VW00 463 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 MBNL2Q5VZF2 373 aaKnown RBP13.65□□□□□ -0.22
COL7A1-204ENST00000462475 SLC25A47Q6Q0C1 308 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 ABHD4Q8TB40 342 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 GEMIN6Q8WXD5 167 aaKnown RBP13.65□□□□□ -0.22
COL7A1-204ENST00000462475 RAB1CQ92928 201 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 GCDHQ92947 438 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-204ENST00000462475 OR2H1Q9GZK4 316 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 WNT5BQ9H1J7 359 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 EIF3KQ9UBQ5 218 aaKnown RBP13.65□□□□□ -0.22
COL7A1-204ENST00000462475 OPN4Q9UHM6 478 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 HIF3AQ9Y2N7 669 aa13.65□□□□□ -0.22
COL7A1-204ENST00000462475 PLSCR5A0PG75 271 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 ISPDA4D126 451 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 J3QLI3 93 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 DYNC1I1O14576 645 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 NGFP01138 241 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 FUT4P22083 530 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 LAP3P28838 519 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 RBMXP38159 391 aaKnown RBP13.64□□□□□ -0.23
COL7A1-204ENST00000462475 PPP1CBP62140 327 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 LCN2P80188 198 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 FAM27BQ5VT28 67 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 IGFN1Q86VF2 1251 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 C3orf56Q8N813 242 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 OR8J3Q8NGG0 315 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 LRRC58Q96CX6 371 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 ECSITQ9BQ95 431 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 ALG12Q9BV10 488 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 RBM4Q9BWF3 364 aaKnown RBP13.64□□□□□ -0.23
COL7A1-204ENST00000462475 ESM1Q9NQ30 184 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 DCAF16Q9NXF7 216 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 UBAP1Q9NZ09 502 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 MEGF8Q7Z7M0 2845 aa13.64□□□□□ -0.23
COL7A1-204ENST00000462475 GMNCA6NCL1 334 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 SPRY1O43609 319 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-204ENST00000462475 FSHBP01225 129 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 IGHMP01871 453 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 ADH4P08319 380 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 THRBP10828 461 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 NR2C1P13056 603 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 RPL27P61353 136 aaKnown RBP13.63□□□□□ -0.23
COL7A1-204ENST00000462475 LRRC23Q53EV4 343 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-204ENST00000462475 CYBRD1Q53TN4 286 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 ZNF774Q6NX45 483 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 MICU2Q8IYU8 434 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 BPIFB2Q8N4F0 458 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 LRRC75AQ8NAA5 344 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 NANPQ8TBE9 248 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 C22orf15Q8WYQ4 148 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 ZNF583Q96ND8 569 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 JMJD8Q96S16 334 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 SH3GL1Q99961 368 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 SIKE1Q9BRV8 207 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 SUCNR1Q9BXA5 334 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 TMEM120AQ9BXJ8 343 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 EGLN1Q9GZT9 426 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 C7orf69Q9H7B7 122 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 MSL2Q9HCI7 577 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 A4GNTQ9UNA3 340 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 MGAM2Q2M2H8 2515 aa13.63□□□□□ -0.23
COL7A1-204ENST00000462475 A0A1W2PPL8 197 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 HMGB1P1B2RPK0 211 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-204ENST00000462475 MRASO14807 208 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 ICMTO60725 284 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 CST2P09228 141 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 IFI30P13284 250 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 EGR1P18146 543 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms