RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PSMC3IPQ9P2W1 217 aaPredicted RBP2.22□□□□□ -2.05
USP40-209ENST00000452724 UVRAGQ9P2Y5 699 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 STARD10Q9Y365 291 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 TMEM14AQ9Y6G1 99 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 GAKO14976 1311 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 ZNF816-ZNF321PA0A0X1KG74 233 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 COLCA2A8K830 154 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 CDC7O00311 574 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 MRPS12O15235 138 aaKnown RBP2.21□□□□□ -2.06
USP40-209ENST00000452724 DPM1O60762 260 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 RP2O75695 350 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 CLIC3O95833 236 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 ZNF43P17038 809 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 TNNI1P19237 187 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 CHMLP26374 656 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 GDI1P31150 447 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 ZNF138P52744 262 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 ACTR3P61158 418 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 TWF1Q12792 350 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 VPS26BQ4G0F5 336 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 PTPN20Q4JDL3 420 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 RNASEKQ6P5S7 137 aaKnown RBP2.21□□□□□ -2.06
USP40-209ENST00000452724 CEMP1Q6PRD7 247 aaPredicted RBP2.21□□□□□ -2.06
USP40-209ENST00000452724 IGFL1Q6UW32 110 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 TMEM107Q6UX40 140 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 NTM-AS1Q6ZSK4 140 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 ZNF721Q8TF20 911 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 SHC3Q92529 594 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 PKNOX2Q96KN3 472 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 LINC00477Q96M19 166 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 ZNF578Q96N58 590 aaPredicted RBP2.21□□□□□ -2.06
USP40-209ENST00000452724 PISDQ9UG56 409 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 GOLT1BQ9Y3E0 138 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 CSDC2Q9Y534 153 aaKnown RBP2.21□□□□□ -2.06
USP40-209ENST00000452724 CABIN1Q9Y6J0 2220 aa2.21□□□□□ -2.06
USP40-209ENST00000452724 RBFOX2O43251 390 aaKnown RBP eCLIP2.2□□□□□ -2.06
USP40-209ENST00000452724 FOXH1O75593 365 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 TCN2P20062 427 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 AQP2P41181 271 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 RGNQ15493 299 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 THEM4Q5T1C6 240 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 ARL9Q6T311 187 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 NANOGNBQ7Z5D8 188 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 WDR86Q86TI4 376 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 OR10J6PQ8NGY7 276 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 KCNG3Q8TAE7 436 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 ZNF461Q8TAF7 563 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 ZNF502Q8TBZ5 544 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 CCDC126Q96EE4 140 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 ZNF681Q96N22 645 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 ATP5SQ99766 215 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 SAV1Q9H4B6 383 aaPredicted RBP2.2□□□□□ -2.06
USP40-209ENST00000452724 SYNDIG1Q9H7V2 258 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 UBE2ZQ9H832 354 aaPredicted RBP2.2□□□□□ -2.06
USP40-209ENST00000452724 FGF20Q9NP95 211 aaPredicted RBP2.2□□□□□ -2.06
USP40-209ENST00000452724 ZDHHC4Q9NPG8 344 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 FAM49BQ9NUQ9 324 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 TMED5Q9Y3A6 229 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 RFNGQ9Y644 331 aa2.2□□□□□ -2.06
USP40-209ENST00000452724 GPATCH8Q9UKJ3 1502 aaKnown RBP2.2□□□□□ -2.06
USP40-209ENST00000452724 IGLV1-50A0A075B6I6 118 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 IGLV2-18A0A075B6J9 118 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 GLYATL1P3A0A0U1RQE8 302 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 TMEM223A0PJW6 202 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 C7orf66A4D0T2 115 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 H0Y8G0 127 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 RAD51BO15315 384 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 RBBP9O75884 186 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 CLPXO76031 633 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 CCNB1P14635 433 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 RAB3BP20337 219 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 NSG1P42857 185 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 SULT1E1P49888 294 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 ATP5IP56385 69 aaPredicted RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 MXD1Q05195 221 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 LOXL1Q08397 574 aaPredicted RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 PON2Q15165 354 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 PPP1R7Q15435 360 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 COX19Q49B96 90 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 FAM78AQ5JUQ0 283 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 ZNF684Q5T5D7 378 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 ZNF880Q6PDB4 577 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 PLET1Q6UQ28 207 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 SHISA6Q6ZSJ9 500 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 Q6ZSR3 168 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 HMGN2P46Q86SG4 172 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 CDR2LQ86X02 465 aaPredicted RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 MMAAQ8IVH4 418 aaKnown RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 PRSS58Q8IYP2 241 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 SLC7A13Q8TCU3 470 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 RGP1Q92546 391 aaPredicted RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 OR10C1Q96KK4 312 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 CNDP1Q96KN2 507 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 ZNF382Q96SR6 550 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 RTBDNQ9BSG5 229 aaPredicted RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 PKIBQ9C010 78 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 ILKAPQ9H0C8 392 aaPredicted RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 GPATCH2LQ9NWQ4 482 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 CTSFQ9UBX1 484 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 ST3GAL6Q9Y274 331 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms