RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TMEM244Q5VVB8 128 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 TP53RKQ96S44 253 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SYT11Q9BT88 431 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 DDA1Q9BW61 102 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 PLSCR5A0PG75 271 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SLC22A20A6NK97 555 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 ZNF814B7Z6K7 855 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 CSTAP01040 98 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OMGP23515 440 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 BDH1Q02338 343 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SSBP1Q04837 148 aaKnown RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 SLC16A14Q7RTX9 510 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 METTL27Q8N6F8 245 aaPredicted RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 SLC26A10Q8NG04 563 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 CHAC2Q8WUX2 184 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SDSLQ96GA7 329 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SIRT3Q9NTG7 399 aaPredicted RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 TCRBV5S2A0A599 114 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 H0Y8G0 127 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 M0QYG6 137 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 HCRTO43612 131 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SUSD5O60279 629 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 AIFM1O95831 613 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 ZNF789Q5FWF6 425 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 FFAR4Q5NUL3 377 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 EXOSC6Q5RKV6 272 aaKnown RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 ZNF440Q8IYI8 595 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 NUP43Q8NFH3 380 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OR4N2Q8NGD1 307 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OR52R1Q8NGF1 315 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SLC2A12Q8TD20 617 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 TMEM37Q8WXS4 190 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 ATF6BQ99941 703 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 ZNF426Q9BUY5 554 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 PHF7Q9BWX1 381 aaPredicted RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 EGLN3Q9H6Z9 239 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 CNOT4O95628 575 aaKnown RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 EIF4EP06730 217 aaKnown RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 DRD2P14416 443 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 GABRA3P34903 492 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 PGGT1BP53609 377 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OR7A5Q15622 319 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 GSG1Q2KHT4 349 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SBSNQ6UWP8 590 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 RIMKLAQ8IXN7 391 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 MRGPRX2Q96LB1 330 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 DPH1Q9BZG8 443 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 PLEKHJ1Q9NW61 149 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OR5V1Q9UGF6 321 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 IGLON5A6NGN9 336 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CDRT15L2A8MXV6 281 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 M0R3H8 397 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 HOXD4P09016 255 aaPredicted RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 CT45A8P0DMV1 189 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CT45A9P0DMV2 189 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 ACKR3P25106 362 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 DIO1P49895 249 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CT45A2Q5DJT8 189 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 ELFN2Q5R3F8 820 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 WDR73Q6P4I2 378 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 KLF16Q9BXK1 252 aaPredicted RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 WBP1LQ9NX94 342 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 HHLA2Q9UM44 414 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 MYH11P35749 1972 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 C1orf226A1L170 272 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 GLOD5A6NK44 160 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CD99P14209 185 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 HABP2Q14520 560 aaPredicted RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 MEP1BQ16820 701 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 LYRM7Q5U5X0 104 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 MANEALQ5VSG8 457 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 LKAAEAR1Q8TD35 194 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 OR10C1Q96KK4 312 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 RNF24Q9Y225 148 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 HCFC2Q9Y5Z7 792 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CCDC187A0A096LP49 1063 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 A6NLC8 198 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 OR2T7P0C7T2 308 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 EMP2P54851 167 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CLDN12P56749 244 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 ZNF100Q8IYN0 542 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 OR2T27Q8NH04 317 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 DVL3Q92997 716 aaPredicted RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 FAM122AQ96E09 287 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 DPH7Q9BTV6 452 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 MTHFD2LQ9H903 347 aaPredicted RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 METTL1Q9UBP6 276 aaKnown RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 IL20RAQ9UHF4 553 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 A0A1B0GTQ1 180 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 ZNF860A6NHJ4 632 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 ST8SIA3O43173 380 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CTSLP07711 333 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 SDC1P18827 310 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 RPS26P62854 115 aaKnown RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 HHEXQ03014 270 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 KIAA0895LQ68EN5 471 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 ZNF322Q6U7Q0 402 aaPredicted RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 OR5L1Q8NGL2 311 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 NUDCD2Q8WVJ2 157 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 SCAMP4Q969E2 229 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms