RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CCL2P13500 99 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 ZNF32P17041 273 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 MSR1P21757 451 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 LAP3P28838 519 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 SLC6A6P31641 620 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 EVX1P49640 407 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 PCBD1P61457 104 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 MS4A2Q01362 244 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 FAM98BQ52LJ0 330 aaKnown RBP13.1□□□□□ -0.31
LIMS3-201ENST00000437679 FOXL2NBQ6ZUU3 175 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 Q71RC1 249 aaPredicted RBP13.1□□□□□ -0.31
LIMS3-201ENST00000437679 ADCK1Q86TW2 530 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 FAM168AQ92567 244 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 MRPL24Q96A35 216 aaKnown RBP13.1□□□□□ -0.31
LIMS3-201ENST00000437679 ASB9Q96DX5 294 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 SORCS2Q96PQ0 1159 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 TRIM15Q9C019 465 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 HIVEP2P31629 2446 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 IGHV4-30-2A0A087WSY4 118 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 TMEM129A0AVI4 362 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 C12orf71A8MTZ7 269 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 TNFRSF11BO00300 401 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 UBOX5O94941 541 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 SNAP29O95721 258 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 FAM157BP0CG42 384 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 APEHP13798 732 aaKnown RBP13.09□□□□□ -0.31
LIMS3-201ENST00000437679 STOMP27105 288 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 APEX1P27695 318 aaKnown RBP13.09□□□□□ -0.31
LIMS3-201ENST00000437679 RAD52P43351 418 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 MAGEA2P43356 314 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 HMGA2P52926 109 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 FXYD6P3P58550 94 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 RFX4Q33E94 735 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 DNAL1Q4LDG9 190 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 C1orf94Q6P1W5 598 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 ALDH16A1Q8IZ83 802 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 PAQR4Q8N4S7 273 aaPredicted RBP13.09□□□□□ -0.31
LIMS3-201ENST00000437679 LINC00471Q8N535 108 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 MAPK1IP1LQ8NDC0 245 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 OR10H5Q8NGA6 315 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 CLPTM1LQ96KA5 538 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 ERMAPQ96PL5 475 aaPredicted RBP13.09□□□□□ -0.31
LIMS3-201ENST00000437679 WACQ9BTA9 647 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 MRPL37Q9BZE1 423 aaKnown RBP13.09□□□□□ -0.31
LIMS3-201ENST00000437679 SYT4Q9H2B2 425 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 OR52D1Q9H346 318 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 RERGLQ9H628 205 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 MYOZ1Q9NP98 299 aaPredicted RBP13.09□□□□□ -0.31
LIMS3-201ENST00000437679 POLE4Q9NR33 117 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 TIMM10BQ9Y5J6 103 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 LYVE1Q9Y5Y7 322 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 ZANQ9Y493 2812 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 ABCA1O95477 2261 aa13.09□□□□□ -0.31
LIMS3-201ENST00000437679 M0R233 179 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 IMPA2O14732 288 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 GYG2O15488 501 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 SLC16A7O60669 478 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 KHDRBS3O75525 346 aaKnown RBP13.08□□□□□ -0.32
LIMS3-201ENST00000437679 LY6HO94772 140 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 PPP1R3DO95685 299 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 TXNDC12O95881 172 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 LCKP06239 509 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 ADRA2AP08913 450 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 SLC25A16P16260 332 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 CTLA4P16410 223 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 CCNOP22674 350 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 PCSK6P29122 969 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 GSSP48637 474 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 GDI2P50395 445 aaKnown RBP13.08□□□□□ -0.32
LIMS3-201ENST00000437679 PDLIM4P50479 330 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 SELENOVP59797 346 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 PSG4Q00888 419 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 TRAP1Q12931 704 aaKnown RBP13.08□□□□□ -0.32
LIMS3-201ENST00000437679 TSPAN31Q12999 210 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 RGS7BPQ6MZT1 257 aaPredicted RBP13.08□□□□□ -0.32
LIMS3-201ENST00000437679 PGBD2Q6P3X8 592 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 SYT9Q86SS6 491 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 CPEB3Q8NE35 698 aaKnown RBP13.08□□□□□ -0.32
LIMS3-201ENST00000437679 AKR7LQ8NHP1 331 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 NEU4Q8WWR8 484 aaPredicted RBP13.08□□□□□ -0.32
LIMS3-201ENST00000437679 SYT3Q9BQG1 590 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 IFT27Q9BW83 186 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 BCL2L14Q9BZR8 327 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 OR2H1Q9GZK4 316 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 OR51B6Q9H340 312 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 VSX1Q9NZR4 365 aaPredicted RBP13.08□□□□□ -0.32
LIMS3-201ENST00000437679 DUSP13Q9UII6 198 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 FZR1Q9UM11 496 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 CR1P17927 2039 aa13.08□□□□□ -0.32
LIMS3-201ENST00000437679 NSD1Q96L73 2696 aaPredicted RBP13.07□□□□□ -0.32
LIMS3-201ENST00000437679 NIPBLQ6KC79 2804 aaeCLIP13.07□□□□□ -0.32
LIMS3-201ENST00000437679 A0A1W2PPW3 197 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 SYNGR3O43761 229 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 CCNB2O95067 398 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 RAP2AP10114 183 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 NOS3P29474 1203 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 UCP2P55851 309 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 ENDOGQ14249 297 aaKnown RBP13.07□□□□□ -0.32
LIMS3-201ENST00000437679 CARTPTQ16568 116 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 MSMPQ1L6U9 139 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms