RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NMNAT3Q96T66 252 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 ALG12Q9BV10 488 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 UBAP1Q9NZ09 502 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 H2AFY2Q9P0M6 372 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-208ENST00000437607 FLVCR1Q9Y5Y0 555 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 PLCE1Q9P212 2302 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 HEATR1Q9H583 2144 aaKnown RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 IGKV3D-15A0A087WSY6 115 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 PRSS37A4D1T9 235 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 SLC22A31A6NKX4 558 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 FAM183AA6NL82 134 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF716A6NP11 495 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 GABRB1P18505 474 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 CSNK1A1P48729 337 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 NUDT6P53370 316 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF91Q05481 1191 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 CDK5R2Q13319 367 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 OCLNQ16625 522 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 KLHL12Q53G59 568 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 RBM48Q5RL73 367 aaKnown RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 C6orf141Q5SZD1 244 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 CARD17Q5XLA6 110 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 STAC2Q6ZMT1 411 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 CREB3L2Q70SY1 520 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 CPOQ8IVL8 374 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 PROKR2Q8NFJ6 384 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 BPIFB6Q8NFQ5 453 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 OR2T4Q8NH00 348 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 OR6X1Q8NH79 312 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 FNDC8Q8TC99 324 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 UBE2FQ969M7 185 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF566Q969W8 418 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 TMEM45BQ96B21 275 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF582Q96NG8 517 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF385AQ96PM9 386 aaKnown RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 EMC6Q9BV81 110 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 SYT4Q9H2B2 425 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 MED20Q9H944 212 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 RPRD1BQ9NQG5 326 aaKnown RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF701Q9NV72 531 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ASB6Q9NWX5 421 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 SCN3BQ9NY72 215 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 AASSQ9UDR5 926 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 PROCRQ9UNN8 238 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 MYRFQ9Y2G1 1151 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 NOSIPQ9Y314 301 aaKnown RBP10.67□□□□□ -0.7
PTPRF-208ENST00000437607 ALPK2Q86TB3 2170 aa10.67□□□□□ -0.7
PTPRF-208ENST00000437607 SLC35F4A4IF30 521 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CENPBD1B2RD01 187 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 AHCYL1O43865 530 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 ENTPD6O75354 484 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 SLC43A1O75387 559 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 WBP4O75554 376 aaKnown RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 TRMUO75648 421 aaKnown RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CCDC159P0C7I6 412 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CDKN2AP42771 156 aaKnown RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 SLC25A1P53007 311 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 GABARAPL2P60520 117 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CXCR4P61073 352 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CSNK2BP67870 215 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CAMK2DQ13557 499 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 APOFQ13790 326 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 BEX5Q5H9J7 111 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 SLC25A30Q5SVS4 291 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 UGT2A3Q6UWM9 527 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF704Q6ZNC4 412 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 AAED1Q7RTV5 226 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 BCDIN3DQ7Z5W3 292 aaKnown RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 NPEPL1Q8NDH3 523 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 BBS1Q8NFJ9 593 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 OR6K6Q8NGW6 343 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 OR6N1Q8NGY5 312 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 SPATA3Q8NHX4 192 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 SLC25A44Q96H78 314 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 GMPPAQ96IJ6 420 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 TXNDC15Q96J42 360 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 OR2M2Q96R28 347 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 KCNK17Q96T54 332 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 TMEM204Q9BSN7 226 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 OR51V1Q9H2C8 321 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 RERGLQ9H628 205 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 BCO1Q9HAY6 547 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 GP6Q9HCN6 339 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CCNB1IP1Q9NPC3 277 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 B3GAT2Q9NPZ5 323 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 PLSCR4Q9NRQ2 329 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 GLRX2Q9NS18 164 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 VSX1Q9NZR4 365 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 CLEC4AQ9UMR7 237 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 EMC9Q9Y3B6 208 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 TPRKBQ9Y3C4 175 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 RPL36Q9Y3U8 105 aaKnown RBP10.66□□□□□ -0.7
PTPRF-208ENST00000437607 PCDHGB5Q9Y5G0 923 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 SVEP1Q4LDE5 3571 aa10.66□□□□□ -0.7
PTPRF-208ENST00000437607 IRGMA1A4Y4 181 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 SLC22A23A1A5C7 686 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 OR6C68A6NDL8 312 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 EFCAB10A6NFE3 127 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms