RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 UBL3O95164 117 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CST5P28325 142 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CA5AP35218 305 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ARSDP51689 593 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ZXDBP98169 803 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 OPCMLQ14982 345 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SOHLH1Q5JUK2 328 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ETFRF1Q6IPR1 90 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SLC36A1Q7Z2H8 476 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 GABRG1Q8N1C3 465 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 RNF141Q8WVD5 230 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 LINC01599Q8WXQ3 324 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 PCYT2Q99447 389 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SLC25A21Q9BQT8 299 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 MENTQ9BUN1 341 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 IL17CQ9P0M4 197 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 AJAP1Q9UKB5 411 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 NFS1Q9Y697 457 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 GABRPO00591 440 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 NID1P14543 1247 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SLC6A11P48066 632 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM217Q8N7C4 229 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 OR13C2Q8NGS9 318 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF480Q8WV37 535 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CCDC74AQ96AQ1 378 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 MOB3AQ96BX8 217 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TXLNGYQ9BZA5 131 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 DEFB127Q9H1M4 99 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 PLK3Q9H4B4 646 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TCFL5Q9UL49 500 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SCN1AP35498 2009 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TNFRSF10CO14798 259 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 DSCR3O14972 297 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TCAPO15273 167 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SIAH2O43255 324 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CR2P20023 1033 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 RBP2P50120 134 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF140P52738 457 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SEMA3BQ13214 749 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SHHQ15465 462 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 Q1RN00 199 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 C18orf21Q32NC0 220 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 RGS7BPQ6MZT1 257 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM200AQ86VY9 491 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CCDC71Q8IV32 467 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 OR5AS1Q8N127 324 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SIRT6Q8N6T7 355 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 WDR31Q8NA23 367 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ASB13Q8WXK3 278 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CSF3RQ99062 836 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF251Q9BRH9 671 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ANKRD10Q9NXR5 420 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 NPAP1Q9NZP6 1156 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ZFC3H1O60293 1989 aaKnown RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM72A0PK05 275 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SERTM1A2A2V5 107 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 C5orf49A4QMS7 147 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 H0YIG0 161 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 XRCC2O43543 280 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM127O75204 238 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 OR5G3P0C626 314 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SDC1P18827 310 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 KIAA1024LP59773 190 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 EBPQ15125 230 aaKnown RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 HENMT1Q5T8I9 393 aaKnown RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ARFGAP1Q8N6T3 406 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 NPWQ8N729 165 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 APH1BQ8WW43 257 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 DPF1Q92782 380 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 LHPPQ9H008 270 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CLMPQ9H6B4 373 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 UBE2ZQ9H832 354 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 NKX1-2Q9UD57 310 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TERTO14746 1132 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SMAD6O43541 496 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 PMP2P02689 132 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ANKRD34CP0C6C1 535 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 TBXA2RP21731 343 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 CD1CP29017 333 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SOX4Q06945 474 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SMAGPQ0VAQ4 97 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SLC10A2Q12908 348 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 GGTA1PQ4G0N0 100 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 DLK2Q6UY11 383 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SYT9Q86SS6 491 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 GSTO2Q9H4Y5 243 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SIAEQ9HAT2 523 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 FKBP11Q9NYL4 201 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 PPT2Q9UMR5 302 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 DOCK1Q14185 1865 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 TARM1B6A8C7 271 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 MS4A18H0YCH9 400 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SRFP11831 508 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 POU3F3P20264 500 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 HOXD9P28356 352 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 CCR7P32248 378 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ALKBH1Q13686 389 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 MS4A18Q3C1V0 323 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 LILRA2Q8N149 483 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 BORCS6Q96GS4 357 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms