RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 C1orf198Q9H425 327 aa12.76□□□□□ -0.37
LIMS4-201ENST00000413601 SLC7A8Q9UHI5 535 aa12.76□□□□□ -0.37
LIMS4-201ENST00000413601 FZR1Q9UM11 496 aa12.76□□□□□ -0.37
LIMS4-201ENST00000413601 PRPF19Q9UMS4 504 aaKnown RBP12.76□□□□□ -0.37
LIMS4-201ENST00000413601 FKBP7Q9Y680 259 aa12.76□□□□□ -0.37
LIMS4-201ENST00000413601 IMPA2O14732 288 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 AHCYL1O43865 530 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 UBOX5O94941 541 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 IGFBP1P08833 259 aaPredicted RBP12.75□□□□□ -0.37
LIMS4-201ENST00000413601 ADRA2AP08913 450 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 CST2P09228 141 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 MSR1P21757 451 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 APLNRP35414 380 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 RPS23P62266 143 aaKnown RBP12.75□□□□□ -0.37
LIMS4-201ENST00000413601 PSG4Q00888 419 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 ENDOGQ14249 297 aaKnown RBP12.75□□□□□ -0.37
LIMS4-201ENST00000413601 C2CD3Q4AC94 2353 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 LCE2DQ5TA82 110 aaPredicted RBP12.75□□□□□ -0.37
LIMS4-201ENST00000413601 GPR139Q6DWJ6 353 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 DPY19L2P2Q6ZN68 376 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 PTCHD4Q6ZW05 846 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 LRP11Q86VZ4 500 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 OR1J2Q8NGS2 313 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 FANK1Q8TC84 345 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 C10orf105Q8TEF2 133 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 CCDC124Q96CT7 223 aaKnown RBP12.75□□□□□ -0.37
LIMS4-201ENST00000413601 THTPAQ9BU02 230 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 ZNF416Q9BWM5 594 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 RAB1BQ9H0U4 201 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 SYT4Q9H2B2 425 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 OR52D1Q9H346 318 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 RERGLQ9H628 205 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 DYNLRB1Q9NP97 96 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 EMC7Q9NPA0 242 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 LYVE1Q9Y5Y7 322 aa12.75□□□□□ -0.37
LIMS4-201ENST00000413601 SETD2Q9BYW2 2564 aaPredicted RBP12.75□□□□□ -0.37
LIMS4-201ENST00000413601 TNFRSF11BO00300 401 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 KRT36O76013 467 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 PPP1R3DO95685 299 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 SNAP29O95721 258 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 CTLA4P16410 223 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 CCNOP22674 350 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 FPR3P25089 353 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 STOMP27105 288 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 IFNGR2P38484 337 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 CDKN2AP42771 156 aaKnown RBP12.74□□□□□ -0.37
LIMS4-201ENST00000413601 MAGEA2P43356 314 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 GSSP48637 474 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 EVX1P49640 407 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 RPS6KA3P51812 740 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 HMGA2P52926 109 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 KRTAP1-1Q07627 177 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 PPP1R8Q12972 351 aaKnown RBP12.74□□□□□ -0.37
LIMS4-201ENST00000413601 RFX4Q33E94 735 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 C1orf94Q6P1W5 598 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 PGBD2Q6P3X8 592 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 UGT2A3Q6UWM9 527 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 GNPDA2Q8TDQ7 276 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 ASB9Q96DX5 294 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 ERMAPQ96PL5 475 aaPredicted RBP12.74□□□□□ -0.37
LIMS4-201ENST00000413601 OR2H1Q9GZK4 316 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 WNT5BQ9H1J7 359 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 LRMDAQ9H2I8 198 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 MAGIXQ9H6Y5 334 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 POLE4Q9NR33 117 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 MYEF2Q9P2K5 600 aaKnown RBP12.74□□□□□ -0.37
LIMS4-201ENST00000413601 DUSP13Q9UII6 198 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 FBXO9Q9UK97 447 aaPredicted RBP12.74□□□□□ -0.37
LIMS4-201ENST00000413601 TIMM10BQ9Y5J6 103 aa12.74□□□□□ -0.37
LIMS4-201ENST00000413601 ZANQ9Y493 2812 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 LOC100509620A0A075B734 347 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 A0A096LNT2 108 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 SYNGR3O43761 229 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 SLC16A7O60669 478 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 TXNDC12O95881 172 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 LCKP06239 509 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 CSF3P09919 207 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 HOXB4P17483 251 aaPredicted RBP12.73□□□□□ -0.37
LIMS4-201ENST00000413601 SLC6A6P31641 620 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 ALDH3B1P43353 468 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 PDLIM4P50479 330 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 UCP2P55851 309 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 PCBD1P61457 104 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 ERVS71-1P61550 626 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 TSPAN31Q12999 210 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 MAD2L1BPQ15013 274 aaPredicted RBP12.73□□□□□ -0.37
LIMS4-201ENST00000413601 CARTPTQ16568 116 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 OTPQ5XKR4 325 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 RGS7BPQ6MZT1 257 aaPredicted RBP12.73□□□□□ -0.37
LIMS4-201ENST00000413601 ZNF774Q6NX45 483 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 ADCK1Q86TW2 530 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 ICA1LQ8NDH6 482 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 OR9Q2Q8NGE9 314 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 POM121L2Q96KW2 1035 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 SAMD8Q96LT4 415 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 LRGUKQ96M69 825 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 BTBD10Q9BSF8 475 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 TPK1Q9H3S4 243 aa12.73□□□□□ -0.37
LIMS4-201ENST00000413601 VSX1Q9NZR4 365 aaPredicted RBP12.73□□□□□ -0.37
LIMS4-201ENST00000413601 REV1Q9UBZ9 1251 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms