RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ARRB1P49407 418 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 TAS2R31P59538 309 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CTXN1P60606 82 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 PPIAP62937 165 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CXADRP78310 365 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 SNTB1Q13884 538 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 GPR18Q14330 331 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 COL19A1Q14993 1142 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DEFB115Q30KQ5 88 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 WDR38Q5JTN6 314 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ATPAF1Q5TC12 328 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 TMEM225Q6GV28 225 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ASPHD2Q6ICH7 369 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MTFR2Q6P444 385 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 KCTD18Q6PI47 426 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 IL34Q6ZMJ4 242 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MAMDC2Q7Z304 686 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 SVBPQ8N300 66 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF676Q8N7Q3 588 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR4D10Q8NGI6 311 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR1J4Q8NGS1 313 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 C8orf44Q96CB5 159 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 WDR89Q96FK6 387 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 NMES1Q9C002 83 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 POFUT1Q9H488 388 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 UCK1Q9HA47 277 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 FANCFQ9NPI8 374 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 GPR27Q9NS67 375 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DZANK1Q9NVP4 752 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 PISDQ9UG56 409 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MRTO4Q9UKD2 239 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 HTTP42858 3142 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 TEX13DA0A0J9YY54 714 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CPED1A4D0V7 1026 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 A8MUA0 341 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SMAD7O15105 426 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 NARSO43776 548 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 AKR7A3O95154 331 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CD3DP04234 171 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CD2P06729 351 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 HTR2CP28335 458 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 AQP2P41181 271 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CX3CR1P49238 355 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 B2MP61769 119 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 DCAF7P61962 342 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 BTG2P78543 158 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CYCSP99999 105 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SORDQ00796 357 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 RPL18Q07020 188 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 DHRS2Q13268 280 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SGCBQ16585 318 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 GUCA2BQ16661 112 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 HFEQ30201 348 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 AWAT2Q6E213 333 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SLC18B1Q6NT16 456 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 FAAP20Q6NZ36 180 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF529Q6P280 563 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SKA3Q8IX90 412 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 BEST3Q8N1M1 668 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF511Q8NB15 262 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 AVL9Q8NBF6 648 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 STEAP2Q8NFT2 490 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 OR51D1Q8NGF3 324 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 OR51L1Q8NGJ5 315 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 OR13C8Q8NGS7 320 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 ASB5Q8WWX0 329 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SLC39A7Q92504 469 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 PIGKQ92643 395 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 EAF1Q96JC9 268 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 UQCC2Q9BRT2 126 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 RNF208Q9H0X6 261 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SLC39A1Q9NY26 324 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 COMMD9Q9P000 198 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CKLFQ9UBR5 152 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 FBXL2Q9UKC9 423 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 TRAV36DV7A0A075B6V5 113 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 TRAV18A0A075B6X5 111 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 IGLV1-36A0A0B4J1U3 117 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 TMEM218A2RU14 115 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 OR6C74A6NCV1 312 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 FRG2CA6NGY1 282 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 K7EQS6 105 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SULT2B1O00204 365 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 AGRPO00253 132 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CLDN4O14493 209 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 TO15178 435 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF264O43296 627 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 NPIPB7O75200 414 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 DXOO77932 396 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 DUS4LO95620 317 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CYB5AP00167 134 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 RLN1P04808 185 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 FOLR2P14207 255 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 PTNP21246 168 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 HNRNPA2B1P22626 353 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 NTSR1P30989 418 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 CTHP32929 405 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 LSSP48449 732 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 EFNB2P52799 333 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 ELOCQ15369 112 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms