RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 VSX1Q9NZR4 365 aaPredicted RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 FER1L5A0AVI2 2057 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 PTPRZ1P23471 2315 aaPredicted RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 RGS13O14921 159 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 ZNF24P17028 368 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 LCN1P31025 176 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 CAPZA2P47755 286 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 AFF3P51826 1226 aaKnown RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 NKAIN1Q4KMZ8 207 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 SLC22A6Q4U2R8 563 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 SFRP5Q5T4F7 317 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 TMEM225Q6GV28 225 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 ALKAL2Q6UX46 152 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 CMIPQ8IY22 773 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 BATF2Q8N1L9 274 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 OR13C9Q8NGT0 318 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 FGGYQ96C11 551 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 SEC22AQ96IW7 307 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 SLC22A11Q9NSA0 550 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 LILRA5A6NI73 299 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 GOSR2O14653 212 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 GPRIN2O60269 458 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 PDGFBP01127 241 aaPredicted RBP12.03□□□□□ -0.48
VPS54-203ENST00000409558 IGKV3-11P04433 115 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 NLRC3Q7RTR2 1065 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 CDC20BQ86Y33 519 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 OR4C16Q8NGL9 310 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 OTOSQ8NHW6 89 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 COQ8AQ8NI60 647 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 ZFP64Q9NPA5 681 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 ZNF224Q9NZL3 707 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 ITGB1BP2Q9UKP3 347 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 KCNAB3O43448 404 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 EMP2P54851 167 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 ZP1P60852 638 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 RNF144BQ7Z419 303 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 ELMOD2Q8IZ81 293 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 UBL7Q96S82 380 aaPredicted RBP12.03□□□□□ -0.48
VPS54-203ENST00000409558 LAT2Q9GZY6 243 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 PPP4R1LQ9P1A2 415 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 H2BFMP0C1H6 154 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 ENPP1P22413 925 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 GLO1Q04760 184 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 C2orf68Q2NKX9 166 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 SCMH1Q96GD3 660 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 MSANTD3Q96H12 275 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 ZC3HAV1LQ96H79 300 aaKnown RBP12.03□□□□□ -0.48
VPS54-203ENST00000409558 C4orf45Q96LM5 186 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS54-203ENST00000409558 DIABLOQ9NR28 239 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 CKLFQ9UBR5 152 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 LOC400499M0QZD8 3231 aa12.03□□□□□ -0.48
VPS54-203ENST00000409558 TCRBV16S1A1N1A0A5B0 115 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 SEC14L5O43304 696 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 SPINK2P20155 84 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 IGLV3-21P80748 117 aaPredicted RBP12.02□□□□□ -0.48
VPS54-203ENST00000409558 PUDPQ08623 228 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 SLC17A1Q14916 467 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 GRK1Q15835 563 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 RAB11BQ15907 218 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 MOGAT2Q3SYC2 334 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 SLC35D3Q5M8T2 416 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 EEF1A1P5Q5VTE0 462 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 BTN2A1Q7KYR7 527 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 DCBLD2Q96PD2 775 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 JAM3Q9BX67 310 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 RAMP1O60894 148 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 BGLAPP02818 100 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 CD2P06729 351 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 CCL7P80098 99 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 MFAP5Q13361 173 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 TMEM176BQ3YBM2 270 aaPredicted RBP12.02□□□□□ -0.48
VPS54-203ENST00000409558 LGALSLQ3ZCW2 172 aaPredicted RBP12.02□□□□□ -0.48
VPS54-203ENST00000409558 SLC22A10Q63ZE4 541 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 OR52W1Q6IF63 320 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 ZNF101Q8IZC7 436 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 LRRC75AQ8NAA5 344 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 OR7G1Q8NGA0 311 aa12.02□□□□□ -0.48
VPS54-203ENST00000409558 A8MVM7 634 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 SIGLEC5O15389 551 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 GIMD1P0DJR0 217 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 CALCBP10092 127 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 POU3F2P20265 443 aaPredicted RBP12.02□□□□□ -0.49
VPS54-203ENST00000409558 POLR2HP52434 150 aaKnown RBP12.02□□□□□ -0.49
VPS54-203ENST00000409558 SIGLEC14Q08ET2 396 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 LRRC18Q8N456 261 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 GVQW1Q8N7I0 195 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 TINAGL1Q9GZM7 467 aaPredicted RBP12.02□□□□□ -0.49
VPS54-203ENST00000409558 SLC22A23A1A5C7 686 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 AMY2AP04746 511 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 TRAPPC2P0DI81 140 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 TRAPPC2BP0DI82 140 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 CXCL12P48061 93 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 SLC6A9P48067 706 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 SGCAQ16586 387 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 FNDC7Q5VTL7 733 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 ZNF574Q6ZN55 896 aaPredicted RBP12.02□□□□□ -0.49
VPS54-203ENST00000409558 BPHLQ86WA6 291 aaPredicted RBP12.02□□□□□ -0.49
VPS54-203ENST00000409558 SLC26A10Q8NG04 563 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 DLL4Q9NR61 685 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms