RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SLC35A1P78382 337 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 ZNF79Q15937 498 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 IGFBP7Q16270 282 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 FAM69AQ5T7M9 428 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 PAMR1Q6UXH9 720 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 DOLPP1Q86YN1 238 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 EGFL6Q8IUX8 553 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 SLC35F2Q8IXU6 374 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 OR8H2Q8N162 312 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 MS4A15Q8N5U1 240 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 OR6S1Q8NH40 331 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 MOGAT1Q96PD6 335 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 DCLRE1CQ96SD1 692 aaKnown RBP11.94□□□□□ -0.5
LIMS1-204ENST00000409441 ATF6BQ99941 703 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 SRXN1Q9BYN0 137 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 PAQR5Q9NXK6 330 aaPredicted RBP11.94□□□□□ -0.5
LIMS1-204ENST00000409441 MOKQ9UQ07 419 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 ADAM18Q9Y3Q7 739 aa11.94□□□□□ -0.5
LIMS1-204ENST00000409441 SIRT4Q9Y6E7 314 aaPredicted RBP11.94□□□□□ -0.5
LIMS1-204ENST00000409441 FABP12A6NFH5 140 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 FTCDNL1E5RQL4 147 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 OGG1O15527 345 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 GLCEO94923 617 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 SERPINA3P01011 423 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 BGLAPP02818 100 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 GYPBP06028 91 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 SDHAP31040 664 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 GBX2P52951 348 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 SF3B4Q15427 424 aaKnown RBP eCLIP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 CDONQ4KMG0 1287 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 ALG10Q5BKT4 473 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 DMKNQ6E0U4 476 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 FAM131AQ6UXB0 335 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 FAM122BQ7Z309 247 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 CD163Q86VB7 1156 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 TPRA1Q86W33 373 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 CADM3Q8N126 398 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 MOSPD2Q8NHP6 518 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 KCTD12Q96CX2 325 aaKnown RBP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 ZMYND19Q96E35 227 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 DIRAS2Q96HU8 199 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 FIGNL2A6NMB9 653 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 WDR1O75083 606 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 MT-ATP6P00846 226 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 TFP02787 698 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 HIST1H2ABP04908 130 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 GABRA1P14867 456 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 ENPP1P22413 925 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 MYL9P24844 172 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 AQP2P41181 271 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 AGFG1P52594 562 aaKnown RBP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 OR12D2P58182 307 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 ERVK-25P63136 954 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 H3F3AP84243 136 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 MRPL49Q13405 166 aaKnown RBP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 MFSD13AQ14CX5 517 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 GPR139Q6DWJ6 353 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 ARL9Q6T311 187 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 PLXDC2Q6UX71 529 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 HIST3H2AQ7L7L0 130 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 JAZF1Q86VZ6 243 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 GALNT11Q8NCW6 608 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 ROBO4Q8WZ75 1007 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 HTRA1Q92743 480 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 HIST1H2ACQ93077 130 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 CPNE4Q96A23 557 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-204ENST00000409441 TRIB1Q96RU8 372 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 NMNAT3Q96T66 252 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 ST6GALNAC2Q9UJ37 374 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 OSGIN2Q9Y236 505 aa11.93□□□□□ -0.5
LIMS1-204ENST00000409441 IGHV3-15A0A0B4J1V0 119 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 OR6C68A6NDL8 312 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 E9PI62 339 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 BLOC1S5-TXNDC5H3BN57 136 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 DNPH1O43598 174 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 EIF1BO60739 113 aaKnown RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 SC5DO75845 299 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 AKR7A3O95154 331 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 SYNGR4O95473 234 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 HOXD4P09016 255 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 IL7P13232 177 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 KLK2P20151 261 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 GRPRP30550 384 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 PTGER4P35408 488 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 CTXN1P60606 82 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 SCN1BQ07699 218 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 RIN1Q13671 783 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 ACSF3Q4G176 576 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 CCDC58Q4VC31 144 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 RTL6Q6ICC9 239 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 RPL22L1Q6P5R6 122 aaKnown RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 LEG1Q6P5S2 330 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 C3P1Q6ZMU1 363 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 H1FNTQ75WM6 255 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 GDPD3Q7L5L3 318 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 MAMDC2Q7Z304 686 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 NANOGNBQ7Z5D8 188 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 PXKQ7Z7A4 578 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 ADGRE4PQ86SQ3 457 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 ABHD4Q8TB40 342 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms