RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MRPL22Q9NWU5 206 aaKnown RBP15.89■□□□□ 0.13
SDC1-203ENST00000403076 PSORS1C1Q9UIG5 152 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 COMMD3-BMI1R4GMX3 469 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 KALRNO60229 2985 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 A0A096LPE4 126 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 A0A1W2PPZ6 126 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 A8MXE2 369 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 ZNF593O00488 134 aaPredicted RBP15.88■□□□□ 0.13
SDC1-203ENST00000403076 TMCC2O75069 709 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 LYZL6O75951 148 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 HRGP04196 525 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 ITGA5P08648 1049 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 SBK2P0C263 348 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 GAAP10253 952 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 IGHV1-2P23083 117 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 ENTPD1P49961 510 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 RAB40BQ12829 278 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 GGTLC2Q14390 218 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 P2RY6Q15077 328 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 ZNF474Q6S9Z5 364 aaPredicted RBP15.88■□□□□ 0.13
SDC1-203ENST00000403076 KLHL24Q6TFL4 600 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 SLC16A9Q7RTY1 509 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 GABRG1Q8N1C3 465 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 RELL2Q8NC24 303 aaPredicted RBP15.88■□□□□ 0.13
SDC1-203ENST00000403076 IPCEF1Q8WWN9 437 aaPredicted RBP15.88■□□□□ 0.13
SDC1-203ENST00000403076 MYDGFQ969H8 173 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 NR1H4Q96RI1 486 aaPredicted RBP15.88■□□□□ 0.13
SDC1-203ENST00000403076 COPS4Q9BT78 406 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 KCNN2Q9H2S1 579 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 MARCH7Q9H992 704 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 ADGRL4Q9HBW9 690 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 CNOT2Q9NZN8 540 aaKnown RBP15.88■□□□□ 0.13
SDC1-203ENST00000403076 PCDHGB1Q9Y5G3 927 aa15.88■□□□□ 0.13
SDC1-203ENST00000403076 PCNX1Q96RV3 2341 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 TNFAIP8O95379 198 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 SCG5P05408 212 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 SPARCP09486 303 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 OR8G3PP0DMU2 310 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 SLC15A1P46059 708 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 ST3GAL4Q11206 333 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 ANKRD16Q6P6B7 361 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 FOXL2NBQ6ZUU3 175 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 CXorf67Q86X51 503 aaPredicted RBP15.87■□□□□ 0.13
SDC1-203ENST00000403076 SLC35F2Q8IXU6 374 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 TIGD4Q8IY51 512 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 SLC22A24Q8N4F4 322 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 ZNF433Q8N7K0 673 aaPredicted RBP15.87■□□□□ 0.13
SDC1-203ENST00000403076 OR10H4Q8NGA5 316 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 SMAP2Q8WU79 429 aaPredicted RBP15.87■□□□□ 0.13
SDC1-203ENST00000403076 MRPS18AQ9NVS2 196 aaKnown RBP15.87■□□□□ 0.13
SDC1-203ENST00000403076 SLC5A6Q9Y289 635 aa15.87■□□□□ 0.13
SDC1-203ENST00000403076 EXOGQ9Y2C4 368 aaKnown RBP15.87■□□□□ 0.13
SDC1-203ENST00000403076 RAD51DO75771 328 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 PIPP12273 146 aaPredicted RBP15.86■□□□□ 0.13
SDC1-203ENST00000403076 CAPZA2P47755 286 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 HCCSP53701 268 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 LSM6P62312 80 aaKnown RBP15.86■□□□□ 0.13
SDC1-203ENST00000403076 KCNMB1Q16558 191 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 SLC25A35Q3KQZ1 300 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 FAM27BQ5VT28 67 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 DPY19L4Q7Z388 723 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 OR52I1Q8NGK6 324 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 OR1K1Q8NGR3 316 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 OR2AJ1Q8NGZ0 328 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 NABP1Q96AH0 204 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 TMEM80Q96HE8 168 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 TBX5Q99593 518 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 SH3GL3Q99963 347 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 ZNF416Q9BWM5 594 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 YIPF3Q9GZM5 350 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 CCDC90BQ9GZT6 254 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 CCNB1IP1Q9NPC3 277 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 KCNG2Q9UJ96 466 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 CFAP46Q8IYW2 2715 aa15.86■□□□□ 0.13
SDC1-203ENST00000403076 FAM90A27PA6NNH2 459 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 RGS10O43665 173 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 RAB36O95755 333 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 IL32P24001 234 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 DCKP27707 260 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 RPS27P42677 84 aaKnown RBP15.85■□□□□ 0.13
SDC1-203ENST00000403076 TSC22D1Q15714 1073 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 SLC16A14Q7RTX9 510 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 LINC00346Q8IVM7 164 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 CA5BP1Q8WTZ4 195 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 THEM6Q8WUY1 208 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 DUSP21Q9H596 190 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 FGF20Q9NP95 211 aaPredicted RBP15.85■□□□□ 0.13
SDC1-203ENST00000403076 CHCHD3Q9NX63 227 aaKnown RBP15.85■□□□□ 0.13
SDC1-203ENST00000403076 GALNT8Q9NY28 637 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 ERVK-18Q9QC07 812 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 LAMP5Q9UJQ1 280 aa15.85■□□□□ 0.13
SDC1-203ENST00000403076 DAPL1A0PJW8 107 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 C12orf71A8MTZ7 269 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 CST2P09228 141 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 COX5AP20674 150 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 HOXC12P31275 282 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 GABARAPL2P60520 117 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ACTC1P68032 377 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ACTA1P68133 377 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 SLC35A2P78381 396 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms