RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ELLP55199 621 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 OR1D5P58170 312 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 KDM4DQ6B0I6 523 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 RASD2Q96D21 266 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 ATP23Q9Y6H3 246 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 PPP6CO00743 305 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 PRRG2O14669 202 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 TAAR5O14804 337 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 FAM162BQ5T6X4 162 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 TOX2Q96NM4 488 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 DHCR7Q9UBM7 475 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 GOLT1BQ9Y3E0 138 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 PPP1R2P9O14990 202 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 ATP1B1P05026 303 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 ADRA2CP18825 462 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 BPIFB3P59826 476 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 SNRPGP62308 76 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 EMC4Q5J8M3 183 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 P2RY12Q9H244 342 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 MED9Q9NWA0 146 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 TAS2R5Q9NYW4 299 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 EFSO43281 561 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 F10P00742 488 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 GNB2P62879 340 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 IHHQ14623 411 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 PLXDC2Q6UX71 529 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 TMUB2Q71RG4 321 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF321PQ8N8H1 164 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 IP6K3Q96PC2 410 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 LYSMD1Q96S90 227 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 SLAMF8Q9P0V8 285 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 UGT2A1Q9Y4X1 527 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 PTCRAQ6ISU1 281 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 CACFD1Q9UGQ2 172 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 MN1Q10571 1320 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 CST5P28325 142 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 NKX2-1P43699 371 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 RGRP47804 291 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 NUP98P52948 1817 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 LIM2P55344 173 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 ERHP84090 104 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 TRIM61Q5EBN2 209 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 OR5B3Q8NH48 314 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 CHST11Q9NPF2 352 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 GMPR2Q9P2T1 348 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 TSEN54Q7Z6J9 526 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 FAM71CQ8NEG0 241 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 OR5H6Q8NGV6 325 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 APH1BQ8WW43 257 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 SEH1LQ96EE3 360 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 XRCC3O43542 346 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 RPA2P15927 270 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 POU3F3P20264 500 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 RBP2P50120 134 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 SCARB1Q8WTV0 552 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 FAM173AQ9BQD7 235 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 CHST8Q9H2A9 424 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 KDM3BQ7LBC6 1761 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 KIAA1024LP59773 190 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 COX20Q5RI15 118 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 MFSD12Q6NUT3 480 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 HSD17B11Q8NBQ5 300 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 OR13C8Q8NGS7 320 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 SHISA4Q96DD7 197 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 AMBRA1Q9C0C7 1298 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 BARX1Q9HBU1 254 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 B3GALT5Q9Y2C3 310 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 DDX60Q8IY21 1712 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 STMND1H3BQB6 276 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 SLCO2B1O94956 709 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 BCL6P41182 706 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 CPEB2Q7Z5Q1 589 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 OR5AS1Q8N127 324 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 PFN4Q8NHR9 129 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 LIN7CQ9NUP9 197 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 OR13C7P0DN81 318 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 CD27P26842 260 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 ELAVL1Q15717 326 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 CD276Q5ZPR3 534 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 Q6ZPB1 254 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 OR1M1Q8NGA1 313 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 OR2A14Q96R47 310 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 SLC22A12Q96S37 553 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 COA3Q9Y2R0 106 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 TIMM10BQ9Y5J6 103 aa11.74□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF816-ZNF321PA0A0X1KG74 233 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 OR2C1O95371 312 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 H2AFB1P0C5Y9 115 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 CCR6P51684 374 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 CCR9P51686 369 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 HSF1Q00613 529 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 ACOT6Q3I5F7 207 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 THEM4Q5T1C6 240 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 KCNRGQ8N5I3 272 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 NHLRC2Q8NBF2 726 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 RBPMSQ93062 196 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 DHRS9Q9BPW9 319 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 PIGMQ9H3S5 423 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 V9GYS6 101 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 RGPD5Q99666 1765 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms