RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MANEAQ5SRI9 462 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 HLA-DQA1Q5Y7H0 255 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 RGS7BPQ6MZT1 257 aaPredicted RBP10.95□□□□□ -0.66
CLIP3-201ENST00000360535 SLC36A1Q7Z2H8 476 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 PDZD9Q8IXQ8 264 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 OR1J4Q8NGS1 313 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 GPBAR1Q8TDU6 330 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 PNPLA2Q96AD5 504 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 CMTM3Q96MX0 182 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 LRFN5Q96NI6 719 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 REG4Q9BYZ8 158 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 NKX2-4Q9H2Z4 354 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 APMAPQ9HDC9 416 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 PRODH2Q9UF12 536 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 KIR2DS5A0A0G2JLQ3 304 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 A0A0G2JNG1 304 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 TRBV5-5A0A0J9YX44 114 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 KIR2DS3K7RE56 304 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 OR2A4O95047 310 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 IL5P05113 134 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 GNALP38405 381 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 STARP49675 285 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 AKR1C2P52895 323 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 AKR1C1Q04828 323 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 KIR2DS5Q14953 304 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 MOGAT2Q3SYC2 334 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 KCTD9Q7L273 389 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 GABRG1Q8N1C3 465 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 EID2Q8N6I1 236 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 LRRC75AQ8NAA5 344 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 OR1J2Q8NGS2 313 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 SCARB1Q8WTV0 552 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 OR2A7Q96R45 310 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 KIF25Q9UIL4 384 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 CLDN16Q9Y5I7 305 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 IGHV5-51A0A0C4DH38 117 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 TMEM82A0PJX8 343 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF254O75437 659 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 CTLA4P16410 223 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 SLC25A1P53007 311 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 VWA2Q5GFL6 755 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 RHOUQ7L0Q8 258 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 EXD3Q8N9H8 876 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 STEAP2Q8NFT2 490 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 LMX1AQ8TE12 382 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 CKLFQ9UBR5 152 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 COA3Q9Y2R0 106 aaPredicted RBP10.94□□□□□ -0.66
CLIP3-201ENST00000360535 THADAQ6YHU6 1953 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 SLC22A23A1A5C7 686 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 MFSD2BA6NFX1 497 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 OR4E1P0C645 316 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 HLA-DOBP13765 273 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 VAMP1P23763 118 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 FMODQ06828 376 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 RASGEF1BQ0VAM2 473 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 FZD2Q14332 565 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 SLC17A1Q14916 467 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 ATRAIDQ6UW56 229 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 SEZ6L2Q6UXD5 910 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 FAM219AQ8IW50 185 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 SLC43A2Q8N370 569 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 C12orf45Q8N5I9 185 aaPredicted RBP10.94□□□□□ -0.66
CLIP3-201ENST00000360535 OTOSQ8NHW6 89 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF471Q9BX82 626 aaPredicted RBP10.94□□□□□ -0.66
CLIP3-201ENST00000360535 MFRPQ9BY79 579 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 TMEM14AQ9Y6G1 99 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 LOC100289279A0A1B0GTE1 492 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 CYB5AP00167 134 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 RABIFP47224 123 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 ARRB1P49407 418 aaPredicted RBP10.94□□□□□ -0.66
CLIP3-201ENST00000360535 FUT7Q11130 342 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 CDNFQ49AH0 187 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 SLC22A6Q4U2R8 563 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 EEF1A1P5Q5VTE0 462 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 OR52W1Q6IF63 320 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 Q6ZS52 159 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 BPIFB2Q8N4F0 458 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 OR13C3Q8NGS6 347 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 MARVELD3Q96A59 401 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 LCORQ96JN0 433 aaPredicted RBP10.94□□□□□ -0.66
CLIP3-201ENST00000360535 SPACA5Q96QH8 159 aa10.94□□□□□ -0.66
CLIP3-201ENST00000360535 MRPS18BQ9Y676 258 aaKnown RBP10.94□□□□□ -0.66
CLIP3-201ENST00000360535 IGHV3-20A0A0C4DH32 117 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 H0YIG0 161 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 SRPX2O60687 465 aaPredicted RBP10.93□□□□□ -0.66
CLIP3-201ENST00000360535 CD1AP06126 327 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 CD2P06729 351 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 POU2F2P09086 479 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 IL11P20809 199 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 HTR2CP28335 458 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 YPEL5P62699 121 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 PRTGQ2VWP7 1150 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 DEFB133Q30KQ1 61 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF660Q6AZW8 331 aaPredicted RBP10.93□□□□□ -0.66
CLIP3-201ENST00000360535 SLC18B1Q6NT16 456 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 GVQW1Q8N7I0 195 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 OR6N1Q8NGY5 312 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 PTPMT1Q8WUK0 201 aaPredicted RBP10.93□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF75AQ96N20 296 aa10.93□□□□□ -0.66
CLIP3-201ENST00000360535 SLC7A5P2Q9GIP4 190 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms