RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PRAMEF4O60810 478 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 KLF8O95600 359 aaPredicted RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 NME1P15531 152 aaKnown RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 FCER1GP30273 86 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 OR51S1Q8NGJ8 323 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 SCGB1C2P0DMR2 95 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 LIPCP11150 499 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 ARNTP27540 789 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 UBAC2Q8NBM4 344 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 SCAMP4Q969E2 229 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 NECTIN4Q96NY8 510 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 DNMT3BQ9UBC3 853 aaKnown RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 CD14P08571 375 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 EXOSC2Q13868 293 aaKnown RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 OR5B3Q8NH48 314 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 ASIC5Q9NY37 505 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 A6NDN8 102 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 NCR1O76036 304 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 CD37P11049 281 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 HOXA11P31270 313 aaPredicted RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 TEAD2Q15562 447 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 COX19Q49B96 90 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 IL20Q9NYY1 176 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 ATXN7L1Q9ULK2 861 aaPredicted RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 TXNDC12O95881 172 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 NPY4RP50391 375 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 KCNJ10P78508 379 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 FAM180BQ6P0A1 224 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 PRICKLE2Q7Z3G6 844 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 BAP18Q8IXM2 172 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 FBXO34Q9NWN3 711 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 GLTPD2A6NH11 291 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 RPL7P18124 248 aaKnown RBP13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SLC6A11P48066 632 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 PKDCCQ504Y2 493 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SIGIRRQ6IA17 410 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SLC35A4Q96G79 324 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SLC17A5Q9NRA2 495 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 BET1LQ9NYM9 111 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 C7orf72A4D263 438 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 IGLON5A6NGN9 336 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 FCGR2AP12318 317 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 CSNK1DP48730 415 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 ESPNLQ6ZVH7 1005 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 OR2AE1Q8NHA4 323 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 EMCNQ9ULC0 261 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 K7ERU9 68 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 EGR3Q06889 387 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF626Q68DY1 528 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SSSCA1O60232 199 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 C1orf105O95561 183 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 GPR75O95800 540 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 MRPL19P49406 292 aaKnown RBP13.17□□□□□ -0.3
COL7A1-201ENST00000328333 ELOBQ15370 118 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 OR8G2PQ6IF36 304 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 C20orf24Q9BUV8 137 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 DOCK3Q8IZD9 2030 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 FAM72CH0Y354 149 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 PLSCR1O15162 318 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SOX15O60248 233 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 STC2O76061 302 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 LIMS3P0CW19 117 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 LIMS4P0CW20 117 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 FAM72AQ5TYM5 149 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SPRYD7Q5W111 196 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 FAM72DQ6L9T8 149 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 LRRTM1Q86UE6 522 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 FAM72BQ86X60 149 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 XCR1P46094 333 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 MEOX2P50222 304 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 IHHQ14623 411 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 OSTM1Q86WC4 334 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 TAS2R5Q9NYW4 299 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 PLRG1O43660 514 aaKnown RBP13.17□□□□□ -0.3
COL7A1-201ENST00000328333 RNGTTO60942 597 aaKnown RBP13.17□□□□□ -0.3
COL7A1-201ENST00000328333 GLCEO94923 617 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SFTA3P0C7M3 94 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 GPR85P60893 370 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SYT14P1Q58G82 188 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 TMEM130Q8N3G9 435 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 TIMM29Q9BSF4 260 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 WNT6Q9Y6F9 365 aa13.17□□□□□ -0.3
COL7A1-201ENST00000328333 SLC31A2O15432 143 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 GLAP06280 429 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 CTSLP07711 333 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ACHEP22303 614 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 RPL12P30050 165 aaKnown RBP13.16□□□□□ -0.3
COL7A1-201ENST00000328333 PNRC1Q12796 327 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-201ENST00000328333 THAP3Q8WTV1 239 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-201ENST00000328333 DUSP23Q9BVJ7 150 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ULBP2Q9BZM5 246 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 CACNA1HO95180 2353 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 APEX1P27695 318 aaKnown RBP13.16□□□□□ -0.3
COL7A1-201ENST00000328333 Q1RN00 199 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 NANOGP1Q8N7R0 232 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 CCDC74BQ96LY2 380 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 LRP6O75581 1613 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 TRAV36DV7A0A075B6V5 113 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ACOD1A6NK06 481 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 GYPBP06028 91 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms