RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZNF266Q14584 549 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 ACKR1Q16570 336 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 NKAIN1Q4KMZ8 207 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 DCAF12Q5T6F0 453 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 NKAIN2Q5VXU1 208 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 GOT1L1Q8NHS2 421 aaPredicted RBP9.84□□□□□ -0.83
CD44-201ENST00000263398 MARC2Q969Z3 335 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 C3orf49Q96BT1 292 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 OR14J1Q9UGF5 321 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 LHX6Q9UPM6 363 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 PUS1Q9Y606 427 aaKnown RBP eCLIP9.84□□□□□ -0.83
CD44-201ENST00000263398 NINQ8N4C6 2090 aa9.84□□□□□ -0.83
CD44-201ENST00000263398 ST6GAL1P15907 406 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 HBG1P69891 147 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 HBG2P69892 147 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 FAM122CQ6P4D5 195 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 LANCL3Q6ZV70 420 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 TMUB2Q71RG4 321 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 BPHLQ86WA6 291 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 LGI3Q8N145 548 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 BCORP1Q8N888 145 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 PATE1Q8WXA2 126 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SEMA4CQ9C0C4 833 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SRRQ9GZT4 340 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 MMP17Q9ULZ9 603 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 BRWD3Q6RI45 1802 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 G3V3Y1 287 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 TXNL1O43396 289 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 ICMTO60725 284 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SLC2A1P11166 492 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 GABRB1P18505 474 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 TGM4P49221 684 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 NPY4RP50391 375 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 MLF2Q15773 248 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 NAXDQ8IW45 347 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 FAM71CQ8NEG0 241 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 LIPHQ8WWY8 451 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 PIGTQ969N2 578 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 MED30Q96HR3 178 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 NKX3-1Q99801 234 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 UTP23Q9BRU9 249 aaKnown RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 TBX21Q9UL17 535 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SHROOM3Q8TF72 1996 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 HSPB2A8KAH6 182 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 ZNF705FA8MVS1 300 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 MPPED1O15442 326 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 AKR7A3O95154 331 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 VAMP5O95183 116 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 ZNF705DP0CH99 300 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 ZNF705BP0CI00 300 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 M6PRP20645 277 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 HCCSP53701 268 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 TLE4Q04727 773 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 KIAA0040Q15053 153 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 HSPB2Q16082 182 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 ZNF74Q16587 644 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 DOK3Q7L591 496 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 BHLHA9Q7RTU4 235 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 OR2L13Q8N349 312 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 OR10R2Q8NGX6 335 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SLC6A13Q9NSD5 602 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 PADI1Q9ULC6 663 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SSC5DA1L4H1 1573 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 OR6C65A6NJZ3 312 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 CD1EP15812 388 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 HTD2P86397 168 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 DOC2BQ14184 412 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SFRP5Q5T4F7 317 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 OGFOD3Q6PK18 319 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 HSD17B11Q8NBQ5 300 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 SLC30A7Q8NEW0 376 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 C16orf52Q8NHV5 167 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 RAB39BQ96DA2 213 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 MSI2Q96DH6 328 aaKnown RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 LAT2Q9GZY6 243 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 PIGMQ9H3S5 423 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 C6orf106Q9H6K1 298 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 GPR160Q9UJ42 338 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 ANKRD31Q8N7Z5 1873 aa9.83□□□□□ -0.84
CD44-201ENST00000263398 COL11A2P13942 1736 aaPredicted RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 POLR2AP24928 1970 aaKnown RBP9.83□□□□□ -0.84
CD44-201ENST00000263398 IGLV3-16A0A075B6K0 115 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 RAB19A4D1S5 217 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 ZNF814B7Z6K7 855 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 PHF1O43189 567 aaPredicted RBP9.82□□□□□ -0.84
CD44-201ENST00000263398 CTSLP07711 333 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 CLDN20P56880 219 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 MRPS34P82930 218 aaKnown RBP9.82□□□□□ -0.84
CD44-201ENST00000263398 HSF1Q00613 529 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 RPL18Q07020 188 aaKnown RBP9.82□□□□□ -0.84
CD44-201ENST00000263398 RBMS3Q6XE24 437 aaKnown RBP9.82□□□□□ -0.84
CD44-201ENST00000263398 RNF165Q6ZSG1 346 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 TMEM200AQ86VY9 491 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 RPS19BP1Q86WX3 136 aaKnown RBP9.82□□□□□ -0.84
CD44-201ENST00000263398 MSRB3Q8IXL7 192 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 FBXL6Q8N531 539 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 SEH1LQ96EE3 360 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 EMC6Q9BV81 110 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 SPNS1Q9H2V7 528 aa9.82□□□□□ -0.84
CD44-201ENST00000263398 ZNF346Q9UL40 294 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms