RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CERS4Q9HA82 394 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 B9D1Q9UPM9 204 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 PLCL2Q9UPR0 1127 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 KIF26BQ2KJY2 2108 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 A0A1B0GTI1 187 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 A0A1W2PQF6 199 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 DCDC2BA2VCK2 349 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 LMX1BO60663 402 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 SLC25A12O75746 678 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 SNAPC5O75971 98 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 PMS2P2O95744 297 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 CLPSP04118 112 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 CNR1P21554 472 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 PBX2P40425 430 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 SKP2Q13309 424 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 TOMM34Q15785 309 aaPredicted RBP11.18□□□□□ -0.62
NUP88-201ENST00000225696 TMEM184AQ6ZMB5 413 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 CD163Q86VB7 1156 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 OTOSQ8NHW6 89 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 MRGPRFQ96AM1 343 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 CYYR1Q96J86 154 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 ZC3H10Q96K80 434 aaKnown RBP11.18□□□□□ -0.62
NUP88-201ENST00000225696 MICU1Q9BPX6 476 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 G6PC3Q9BUM1 346 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 NKX6-2Q9C056 277 aaPredicted RBP11.18□□□□□ -0.62
NUP88-201ENST00000225696 FAM117AQ9C073 453 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 ALX4Q9H161 411 aaPredicted RBP11.18□□□□□ -0.62
NUP88-201ENST00000225696 TAS2R4Q9NYW5 299 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 CPNE7Q9UBL6 633 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 EPHA6Q9UF33 1036 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 MSRAQ9UJ68 235 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 KLK13Q9UKR3 277 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 TNFSF18Q9UNG2 199 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 VSIG4Q9Y279 399 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 COL4A2P08572 1712 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 TDRD6O60522 2096 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 A0A0J9YY10 115 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 TMEM235A6NFC5 223 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 C2orf74A8MZ97 194 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 CDC40O60508 579 aaKnown RBP eCLIP11.17□□□□□ -0.62
NUP88-201ENST00000225696 WDPCPO95876 746 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 TXNDC12O95881 172 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 CD8AP01732 235 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 HLA-DQA2P01906 255 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 GP1BAP07359 652 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 ADCYAP1P18509 176 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 CENPAP49450 140 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 STARP49675 285 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 CAPZA1P52907 286 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 SRSF3P84103 164 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 EGR3Q06889 387 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 RIPPLY1Q0D2K3 151 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 PABPC1L2AQ5JQF8 200 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 FNDC7Q5VTL7 733 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 TMEM225Q6GV28 225 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 WBP2NLQ6ICG8 309 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 CHRDL2Q6WN34 429 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 PARGQ86W56 976 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 KCNRGQ8N5I3 272 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 OR5M8Q8NGP6 311 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 OR1S2Q8NGQ3 325 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 PPP1R1CQ8WVI7 109 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 FAM131CQ96AQ9 280 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 ZNF471Q9BX82 626 aaPredicted RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 SLC19A3Q9BZV2 496 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 HPF1Q9NWY4 346 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 TMEM184BQ9Y519 407 aaPredicted RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 ARID1AO14497 2285 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 TPPPO94811 219 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 MPZL1O95297 269 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 HLA-AP01891 365 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 UBBP0CG47 229 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 UBCP0CG48 685 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 RAB3AP20336 220 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 TACR3P29371 465 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 AVPR2P30518 371 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 PPIAP62937 165 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 RPS27AP62979 156 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 UBA52P62987 128 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 UBE2IP63279 158 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 RASGEF1BQ0VAM2 473 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 SLC17A1Q14916 467 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 GUCA2BQ16661 112 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 SHEQ5VZ18 495 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 GLT8D1Q68CQ7 371 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 C3orf33Q6P1S2 294 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 UNQ6126/PRO20091Q6UXV3 157 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 RHOUQ7L0Q8 258 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 FAM160A2Q8N612 972 aaPredicted RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 ZNF615Q8N8J6 731 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 ASB5Q8WWX0 329 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 LIPHQ8WWY8 451 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 FGF14Q92915 247 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 CMBLQ96DG6 245 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 SLC41A2Q96JW4 573 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 MRPL22Q9NWU5 206 aaKnown RBP11.17□□□□□ -0.62
NUP88-201ENST00000225696 PCDHB10Q9UN67 800 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 PLEKHA6Q9Y2H5 1048 aa11.17□□□□□ -0.62
NUP88-201ENST00000225696 LOC101059948A0A1B0GTJ6 334 aa11.16□□□□□ -0.62
NUP88-201ENST00000225696 A0A1W2PPC1 479 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms