RNA–Protein interactions for RNA: ENST00000641587.1

PHGDH-222, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-222ENST00000641587 LMOD3Q0VAK6 560 aa13.03□□□□□ -0.32
PHGDH-222ENST00000641587 HDGFL1Q5TGJ6 251 aa13.03□□□□□ -0.32
PHGDH-222ENST00000641587 PLBD2Q8NHP8 589 aa13.03□□□□□ -0.32
PHGDH-222ENST00000641587 DPF2Q92785 391 aa13.03□□□□□ -0.32
PHGDH-222ENST00000641587 GBA2Q9HCG7 927 aaPredicted RBP13.03□□□□□ -0.32
PHGDH-222ENST00000641587 SF3B3Q15393 1217 aaKnown RBP13.02□□□□□ -0.33
PHGDH-222ENST00000641587 RGMBQ6NW40 437 aa13.02□□□□□ -0.33
PHGDH-222ENST00000641587 ANKRD13DQ6ZTN6 518 aa13.02□□□□□ -0.33
PHGDH-222ENST00000641587 TMC4Q7Z404 712 aa13.02□□□□□ -0.33
PHGDH-222ENST00000641587 GGA3Q9NZ52 723 aa13.02□□□□□ -0.33
PHGDH-222ENST00000641587 TRIM35Q9UPQ4 493 aa13.02□□□□□ -0.33
PHGDH-222ENST00000641587 KIF23Q02241 960 aaPredicted RBP13.01□□□□□ -0.33
PHGDH-222ENST00000641587 KIF4BQ2VIQ3 1234 aa13.01□□□□□ -0.33
PHGDH-222ENST00000641587 CCDC184Q52MB2 194 aa13.01□□□□□ -0.33
PHGDH-222ENST00000641587 TBC1D16Q8TBP0 767 aa13.01□□□□□ -0.33
PHGDH-222ENST00000641587 SEC31BQ9NQW1 1179 aa13.01□□□□□ -0.33
PHGDH-222ENST00000641587 AKAP11Q9UKA4 1901 aa13□□□□□ -0.33
PHGDH-222ENST00000641587 IRS4O14654 1257 aaPredicted RBP13□□□□□ -0.33
PHGDH-222ENST00000641587 ZNF157P51786 506 aaPredicted RBP13□□□□□ -0.33
PHGDH-222ENST00000641587 DCPSQ96C86 337 aaKnown RBP13□□□□□ -0.33
PHGDH-222ENST00000641587 SCAF8Q9UPN6 1271 aaKnown RBP13□□□□□ -0.33
PHGDH-222ENST00000641587 TRPA1O75762 1119 aa12.99□□□□□ -0.33
PHGDH-222ENST00000641587 RPS12P25398 132 aaKnown RBP12.99□□□□□ -0.33
PHGDH-222ENST00000641587 SOX10P56693 466 aa12.99□□□□□ -0.33
PHGDH-222ENST00000641587 C2orf69Q8N8R5 385 aa12.99□□□□□ -0.33
PHGDH-222ENST00000641587 JARID2Q92833 1246 aaPredicted RBP12.99□□□□□ -0.33
PHGDH-222ENST00000641587 CCDC85AQ96PX6 553 aaPredicted RBP12.99□□□□□ -0.33
PHGDH-222ENST00000641587 EYA3Q99504 573 aa12.99□□□□□ -0.33
PHGDH-222ENST00000641587 DBF4Q9UBU7 674 aaPredicted RBP12.99□□□□□ -0.33
PHGDH-222ENST00000641587 PSME4Q14997 1843 aa12.99□□□□□ -0.33
PHGDH-222ENST00000641587 UFL1O94874 794 aa12.98□□□□□ -0.33
PHGDH-222ENST00000641587 SLC10A3P09131 477 aa12.98□□□□□ -0.33
PHGDH-222ENST00000641587 VIL1P09327 827 aaKnown RBP12.98□□□□□ -0.33
PHGDH-222ENST00000641587 RPS8P62241 208 aaKnown RBP12.98□□□□□ -0.33
PHGDH-222ENST00000641587 DUSP27Q5VZP5 1158 aa12.98□□□□□ -0.33
PHGDH-222ENST00000641587 CDCA5Q96FF9 252 aa12.98□□□□□ -0.33
PHGDH-222ENST00000641587 PHAXQ9H814 394 aaKnown RBP12.98□□□□□ -0.33
PHGDH-222ENST00000641587 RNF186Q9NXI6 227 aa12.98□□□□□ -0.33
PHGDH-222ENST00000641587 HOXB7P09629 217 aa12.97□□□□□ -0.33
PHGDH-222ENST00000641587 WDR43Q15061 677 aaKnown RBP eCLIP12.97□□□□□ -0.33
PHGDH-222ENST00000641587 ANGEL2Q5VTE6 544 aaKnown RBP12.97□□□□□ -0.33
PHGDH-222ENST00000641587 SULF1Q8IWU6 871 aa12.97□□□□□ -0.33
PHGDH-222ENST00000641587 FAM9BQ8IZU0 186 aa12.97□□□□□ -0.33
PHGDH-222ENST00000641587 CSRNP1Q96S65 589 aa12.97□□□□□ -0.33
PHGDH-222ENST00000641587 MBIPQ9NS73 344 aa12.97□□□□□ -0.33
PHGDH-222ENST00000641587 SPEF2Q9C093 1822 aa12.97□□□□□ -0.33
PHGDH-222ENST00000641587 PDE4DIPQ5VU43 2346 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 WTIPA6NIX2 430 aaPredicted RBP12.96□□□□□ -0.33
PHGDH-222ENST00000641587 MOB2Q70IA6 237 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 RIC3Q7Z5B4 369 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 RASAL3Q86YV0 1011 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 CCDC102AQ96A19 550 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 RUNDC1Q96C34 613 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 MYD88Q99836 296 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 ZC3H12CQ9C0D7 883 aaKnown RBP12.96□□□□□ -0.33
PHGDH-222ENST00000641587 HYPKQ9NX55 129 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 SAGE1Q9NXZ1 904 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 PODXL2Q9NZ53 605 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 ANKIB1Q9P2G1 1089 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 GGA1Q9UJY5 639 aa12.96□□□□□ -0.33
PHGDH-222ENST00000641587 ZNF646O15015 1829 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-222ENST00000641587 PAPPA2Q9BXP8 1791 aa12.95□□□□□ -0.34
PHGDH-222ENST00000641587 G3V3G9 751 aa12.95□□□□□ -0.34
PHGDH-222ENST00000641587 ELL2O00472 640 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-222ENST00000641587 TRIM28Q13263 835 aaKnown RBP12.95□□□□□ -0.34
PHGDH-222ENST00000641587 SCARF1Q14162 830 aa12.95□□□□□ -0.34
PHGDH-222ENST00000641587 DCAF8Q5TAQ9 597 aa12.95□□□□□ -0.34
PHGDH-222ENST00000641587 RSBN1LQ6PCB5 846 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-222ENST00000641587 ZBTB38Q8NAP3 1195 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-222ENST00000641587 ZNF280AP59817 542 aaPredicted RBP12.94□□□□□ -0.34
PHGDH-222ENST00000641587 GOLGA2Q08379 1002 aa12.94□□□□□ -0.34
PHGDH-222ENST00000641587 PRAMEF18Q5VWM3 479 aa12.94□□□□□ -0.34
PHGDH-222ENST00000641587 YTHDC1Q96MU7 727 aaKnown RBP12.94□□□□□ -0.34
PHGDH-222ENST00000641587 GMLQ99445 158 aa12.94□□□□□ -0.34
PHGDH-222ENST00000641587 ADAMTS8Q9UP79 889 aa12.94□□□□□ -0.34
PHGDH-222ENST00000641587 ZNF609O15014 1411 aa12.94□□□□□ -0.34
PHGDH-222ENST00000641587 MXD3Q9BW11 206 aa12.93□□□□□ -0.34
PHGDH-222ENST00000641587 MYOZ2Q9NPC6 264 aa12.93□□□□□ -0.34
PHGDH-222ENST00000641587 PDE8AO60658 829 aa12.92□□□□□ -0.34
PHGDH-222ENST00000641587 PCCAP05165 728 aaPredicted RBP12.92□□□□□ -0.34
PHGDH-222ENST00000641587 CCDC152Q4G0S7 254 aa12.92□□□□□ -0.34
PHGDH-222ENST00000641587 AGBL3Q8NEM8 1001 aa12.92□□□□□ -0.34
PHGDH-222ENST00000641587 XDHP47989 1333 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 UBE2Q2LH0YL09 131 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 USP17L8P0C7I0 530 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 ZNF853P0CG23 659 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 NBPF9Q3BBW0 867 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 CTU1Q7Z7A3 348 aaKnown RBP12.91□□□□□ -0.34
PHGDH-222ENST00000641587 ANKRD18AQ8IVF6 992 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 CCDC191Q8NCU4 936 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 CWC25Q9NXE8 425 aaPredicted RBP12.91□□□□□ -0.34
PHGDH-222ENST00000641587 MYH3P11055 1940 aa12.91□□□□□ -0.34
PHGDH-222ENST00000641587 MKI67P46013 3256 aaKnown RBP12.91□□□□□ -0.34
PHGDH-222ENST00000641587 USP17L3A6NCW0 530 aa12.9□□□□□ -0.34
PHGDH-222ENST00000641587 USP17L4A6NCW7 530 aa12.9□□□□□ -0.34
PHGDH-222ENST00000641587 TBC1D8O95759 1140 aa12.9□□□□□ -0.34
PHGDH-222ENST00000641587 MKRN3Q13064 507 aaKnown RBP12.9□□□□□ -0.34
PHGDH-222ENST00000641587 USP17L1Q7RTZ2 530 aa12.9□□□□□ -0.34
PHGDH-222ENST00000641587 C8orf58Q8NAV2 365 aa12.9□□□□□ -0.34
PHGDH-222ENST00000641587 PITPNM2Q9BZ72 1349 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms