RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PLEKHO1Q53GL0 409 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NT5DC4Q86YG4 428 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ABI1Q8IZP0 508 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 DDX27Q96GQ7 796 aaKnown RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ANKIB1Q9P2G1 1089 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 TTC36A6NLP5 189 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 STK10O94804 968 aaKnown RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 HNRNPH1P31943 449 aaKnown RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 UBE4AQ14139 1066 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 GPATCH4Q5T3I0 446 aaKnown RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC121Q6ZUS5 278 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 MCF2L2Q86YR7 1114 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 LBHD1Q9BQE6 289 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 KLHL3Q9UH77 587 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 PLEKHH1Q9ULM0 1364 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 CHD3Q12873 2000 aaKnown RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 STMN1P16949 149 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 LMAN1P49257 510 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 FBXW10Q5XX13 1052 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 PROSER2Q86WR7 435 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 GRPEL1Q9HAV7 217 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF277Q9NRM2 450 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 DONSONQ9NYP3 566 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 CHIC2Q9UKJ5 165 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 PPP1R9AQ9ULJ8 1098 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 SMC3Q9UQE7 1217 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 PCDHB13Q9Y5F0 798 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 MYO18BQ8IUG5 2567 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 FRMD3A2A2Y4 597 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 HOXA7P31268 230 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 PDE1CQ14123 709 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 SMARCC1Q92922 1105 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 TEKT1Q969V4 418 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 VPS50Q96JG6 964 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 NYXQ9GZU5 481 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 UTP6Q9NYH9 597 aaKnown RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 PRDM2Q13029 1718 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 ZBED9Q6R2W3 1325 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 PYGLP06737 847 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 RBBP5Q15291 538 aaKnown RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 LRRC23Q53EV4 343 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 CEP57Q86XR8 500 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 C10orf67Q8IYJ2 551 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 TAF4BQ92750 862 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 GCNAQ96QF7 691 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 TRIM6Q9C030 488 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-219ENST00000641575 OLFML3Q9NRN5 406 aa3.15□□□□□ -1.9
SCN1A-219ENST00000641575 KIF1BO60333 1816 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 BAZ1AQ9NRL2 1556 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SNTNA6NMZ2 147 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 TNFAIP1Q13829 316 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 PFDN4Q9NQP4 134 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 NAA30Q147X3 362 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 E2F4Q16254 413 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 ELMOD1Q8N336 334 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 TMEM57Q8N5G2 664 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 KIF18AQ8NI77 898 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 ATP6V1E2Q96A05 226 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 PEG3Q9GZU2 1588 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 TRAK2O60296 914 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 POLR2BP30876 1174 aaKnown RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 CASQ1P31415 396 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 RFC1P35251 1148 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 WASHC5Q12768 1159 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 ZNF772Q68DY9 489 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 CNNM4Q6P4Q7 775 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 MCM10Q7L590 875 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 BCL2L12Q9HB09 334 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SLC52A1Q9NWF4 448 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 PDE6AP16499 860 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 GSTO1P78417 241 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 ATP2B2Q01814 1243 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SV2BQ7L1I2 683 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 NUDT16Q96DE0 195 aaKnown RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SDF4Q9BRK5 362 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 CIZ1Q9ULV3 898 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 CARNS1A5YM72 827 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 WHAMMP3Q1A5X7 153 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 MAP7D1Q3KQU3 841 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 IRAK1BP1Q5VVH5 260 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 FASTKD5Q7L8L6 764 aaKnown RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SEPT8Q92599 483 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 MYCBPQ99417 103 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC113Q9H0I3 377 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 TXNDC16Q9P2K2 825 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SMARCA5O60264 1052 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 GADD45BO75293 160 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SATB1Q01826 763 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 SPTY2D1Q68D10 685 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC50Q8IVM0 306 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 TRIM4Q9C037 500 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 DPP7Q9UHL4 492 aa3.15□□□□□ -1.91
SCN1A-219ENST00000641575 ACACAQ13085 2346 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 POLR2DO15514 142 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 GBP1P32455 592 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 FAM69CQ0P6D2 419 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PLCB4Q15147 1175 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 LMNTD2Q8IXW0 634 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms