RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ARID4AP29374 1257 aaPredicted RBP8.71□□□□□ -1.02
CD44-239ENST00000639002 MBTPS1Q14703 1052 aa8.71□□□□□ -1.02
CD44-239ENST00000639002 FBXO11Q86XK2 927 aa8.71□□□□□ -1.02
CD44-239ENST00000639002 ABTB2Q8N961 1025 aa8.71□□□□□ -1.02
CD44-239ENST00000639002 FAM13BQ9NYF5 915 aa8.71□□□□□ -1.02
CD44-239ENST00000639002 WFDC8Q8IUA0 241 aa8.7□□□□□ -1.02
CD44-239ENST00000639002 DTWD1Q8N5C7 304 aa8.7□□□□□ -1.02
CD44-239ENST00000639002 HELQQ8TDG4 1101 aa8.7□□□□□ -1.02
CD44-239ENST00000639002 CYP2E1P05181 493 aaPredicted RBP8.69□□□□□ -1.02
CD44-239ENST00000639002 GTF3C2Q8WUA4 911 aaPredicted RBP8.69□□□□□ -1.02
CD44-239ENST00000639002 NUDT16Q96DE0 195 aaKnown RBP8.69□□□□□ -1.02
CD44-239ENST00000639002 SEMA6BQ9H3T3 888 aa8.69□□□□□ -1.02
CD44-239ENST00000639002 ADAMTSL4Q6UY14 1074 aa8.68□□□□□ -1.02
CD44-239ENST00000639002 TRIM33Q9UPN9 1127 aa8.68□□□□□ -1.02
CD44-239ENST00000639002 FNDC3AQ9Y2H6 1198 aaKnown RBP8.68□□□□□ -1.02
CD44-239ENST00000639002 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.68□□□□□ -1.02
CD44-239ENST00000639002 GHRHP01286 108 aa8.67□□□□□ -1.02
CD44-239ENST00000639002 MTMR3Q13615 1198 aa8.67□□□□□ -1.02
CD44-239ENST00000639002 GDF6Q6KF10 455 aaPredicted RBP8.67□□□□□ -1.02
CD44-239ENST00000639002 GGNBP2Q9H3C7 697 aa8.67□□□□□ -1.02
CD44-239ENST00000639002 TMEM63CQ9P1W3 806 aa8.67□□□□□ -1.02
CD44-239ENST00000639002 KIF4AO95239 1232 aa8.66□□□□□ -1.02
CD44-239ENST00000639002 MPSTP25325 297 aa8.66□□□□□ -1.02
CD44-239ENST00000639002 ATP11AP98196 1134 aa8.66□□□□□ -1.02
CD44-239ENST00000639002 TXNRD3Q86VQ6 643 aa8.66□□□□□ -1.02
CD44-239ENST00000639002 IL22RA1Q8N6P7 574 aa8.66□□□□□ -1.02
CD44-239ENST00000639002 SSBP4Q9BWG4 385 aaPredicted RBP8.66□□□□□ -1.02
CD44-239ENST00000639002 ELP3Q9H9T3 547 aa8.66□□□□□ -1.02
CD44-239ENST00000639002 ABI2Q9NYB9 513 aaPredicted RBP8.66□□□□□ -1.02
CD44-239ENST00000639002 CNTN3Q9P232 1028 aa8.66□□□□□ -1.02
CD44-239ENST00000639002 DLL1O00548 723 aa8.65□□□□□ -1.02
CD44-239ENST00000639002 EIF1AXP47813 144 aaKnown RBP8.65□□□□□ -1.02
CD44-239ENST00000639002 NRG1Q02297 640 aaPredicted RBP8.65□□□□□ -1.02
CD44-239ENST00000639002 NOM1Q5C9Z4 860 aaKnown RBP8.65□□□□□ -1.02
CD44-239ENST00000639002 TTC39BQ5VTQ0 682 aaPredicted RBP8.65□□□□□ -1.02
CD44-239ENST00000639002 EDEM1Q92611 657 aa8.65□□□□□ -1.02
CD44-239ENST00000639002 A6NHS1 94 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 DYRK3O43781 588 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 PDGFAP04085 211 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 NPR3P17342 541 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 HYAL2Q12891 473 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 SETDB1Q15047 1291 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 PDE12Q6L8Q7 609 aaKnown RBP8.64□□□□□ -1.03
CD44-239ENST00000639002 XKR5Q6UX68 686 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 USP21Q9UK80 565 aa8.64□□□□□ -1.03
CD44-239ENST00000639002 DNM1Q05193 864 aaKnown RBP8.63□□□□□ -1.03
CD44-239ENST00000639002 IGF2-ASQ6U949 168 aa8.63□□□□□ -1.03
CD44-239ENST00000639002 CEP120Q8N960 986 aa8.63□□□□□ -1.03
CD44-239ENST00000639002 WFDC12Q8WWY7 111 aa8.63□□□□□ -1.03
CD44-239ENST00000639002 RBSNQ9H1K0 784 aa8.63□□□□□ -1.03
CD44-239ENST00000639002 RASSF4Q9H2L5 321 aa8.63□□□□□ -1.03
CD44-239ENST00000639002 TM4SF5O14894 197 aa8.62□□□□□ -1.03
CD44-239ENST00000639002 NOS3P29474 1203 aa8.62□□□□□ -1.03
CD44-239ENST00000639002 C1orf127Q8N9H9 656 aa8.62□□□□□ -1.03
CD44-239ENST00000639002 MZF1P28698 734 aaPredicted RBP8.61□□□□□ -1.03
CD44-239ENST00000639002 IREB2P48200 963 aaKnown RBP8.61□□□□□ -1.03
CD44-239ENST00000639002 CEP135Q66GS9 1140 aa8.61□□□□□ -1.03
CD44-239ENST00000639002 ZNF438Q7Z4V0 828 aa8.61□□□□□ -1.03
CD44-239ENST00000639002 KANSL3Q9P2N6 904 aa8.61□□□□□ -1.03
CD44-239ENST00000639002 SALL4Q9UJQ4 1053 aa8.61□□□□□ -1.03
CD44-239ENST00000639002 ACPPP15309 386 aa8.6□□□□□ -1.03
CD44-239ENST00000639002 FOXD4L6Q3SYB3 417 aaPredicted RBP8.6□□□□□ -1.03
CD44-239ENST00000639002 FOXD4L3Q6VB84 417 aaPredicted RBP8.6□□□□□ -1.03
CD44-239ENST00000639002 GALNT11Q8NCW6 608 aa8.6□□□□□ -1.03
CD44-239ENST00000639002 CHRDQ9H2X0 955 aa8.6□□□□□ -1.03
CD44-239ENST00000639002 POLIQ9UNA4 740 aa8.6□□□□□ -1.03
CD44-239ENST00000639002 NFKBIEO00221 500 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 H2AFB1P0C5Y9 115 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 H2AFB2P0C5Z0 115 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 MEGF10Q96KG7 1140 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 SPACA7Q96KW9 195 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 POP1Q99575 1024 aaKnown RBP8.59□□□□□ -1.03
CD44-239ENST00000639002 PBX4Q9BYU1 374 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 LACRTQ9GZZ8 138 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 PPME1Q9Y570 386 aa8.59□□□□□ -1.03
CD44-239ENST00000639002 LINC01387J3KSC0 135 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 FZD6O60353 706 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 ALX3O95076 343 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 RPLP1P05386 114 aaKnown RBP8.58□□□□□ -1.04
CD44-239ENST00000639002 C8orf34Q49A92 452 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 XP32Q5T750 250 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 CACTIN-AS1Q8N1I8 211 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 TP53INP1Q96A56 240 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 ANO2Q9NQ90 1003 aa8.58□□□□□ -1.04
CD44-239ENST00000639002 FKBP4Q02790 459 aaKnown RBP eCLIP8.57□□□□□ -1.04
CD44-239ENST00000639002 ECM1Q16610 540 aa8.57□□□□□ -1.04
CD44-239ENST00000639002 PRSS36Q5K4E3 855 aa8.57□□□□□ -1.04
CD44-239ENST00000639002 TXNDC11Q6PKC3 985 aa8.57□□□□□ -1.04
CD44-239ENST00000639002 NCAPG2Q86XI2 1143 aa8.57□□□□□ -1.04
CD44-239ENST00000639002 TMEM130Q8N3G9 435 aa8.57□□□□□ -1.04
CD44-239ENST00000639002 Q8N3U1 123 aa8.57□□□□□ -1.04
CD44-239ENST00000639002 SH2B1Q9NRF2 756 aaPredicted RBP8.57□□□□□ -1.04
CD44-239ENST00000639002 F8W735 103 aaPredicted RBP8.56□□□□□ -1.04
CD44-239ENST00000639002 SUPT5HO00267 1087 aaKnown RBP8.56□□□□□ -1.04
CD44-239ENST00000639002 TRPA1O75762 1119 aa8.56□□□□□ -1.04
CD44-239ENST00000639002 SMNDC1O75940 238 aaKnown RBP eCLIP8.56□□□□□ -1.04
CD44-239ENST00000639002 CDC27P30260 824 aa8.56□□□□□ -1.04
CD44-239ENST00000639002 ZNF211Q13398 564 aaPredicted RBP8.56□□□□□ -1.04
CD44-239ENST00000639002 ALKBH2Q6NS38 261 aa8.56□□□□□ -1.04
CD44-239ENST00000639002 ADAM19Q9H013 955 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms