RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 PRKRIP1Q9H875 184 aaPredicted RBP23.11■■□□□ 1.29
CIITA-215ENST00000637439 G3V3G9 751 aa23.1■■□□□ 1.29
CIITA-215ENST00000637439 NOGQ13253 232 aa23.1■■□□□ 1.29
CIITA-215ENST00000637439 DOK7Q18PE1 504 aa23.1■■□□□ 1.29
CIITA-215ENST00000637439 CCDC152Q4G0S7 254 aa23.1■■□□□ 1.29
CIITA-215ENST00000637439 DCAF8Q5TAQ9 597 aa23.1■■□□□ 1.29
CIITA-215ENST00000637439 KRT26Q7Z3Y9 468 aa23.1■■□□□ 1.29
CIITA-215ENST00000637439 DCPSQ96C86 337 aaKnown RBP23.1■■□□□ 1.29
CIITA-215ENST00000637439 PHAXQ9H814 394 aaKnown RBP23.1■■□□□ 1.29
CIITA-215ENST00000637439 APAF1O14727 1248 aa23.09■■□□□ 1.29
CIITA-215ENST00000637439 DDX58O95786 925 aaKnown RBP23.09■■□□□ 1.29
CIITA-215ENST00000637439 PCCAP05165 728 aaPredicted RBP23.09■■□□□ 1.29
CIITA-215ENST00000637439 HUNKP57058 714 aa23.09■■□□□ 1.29
CIITA-215ENST00000637439 MYD88Q99836 296 aa23.09■■□□□ 1.29
CIITA-215ENST00000637439 ANKIB1Q9P2G1 1089 aa23.09■■□□□ 1.29
CIITA-215ENST00000637439 COL4A1P02462 1669 aa23.09■■□□□ 1.29
CIITA-215ENST00000637439 PDE8AO60658 829 aa23.08■■□□□ 1.29
CIITA-215ENST00000637439 TSKSQ9UJT2 592 aa23.08■■□□□ 1.29
CIITA-215ENST00000637439 GGA1Q9UJY5 639 aa23.08■■□□□ 1.29
CIITA-215ENST00000637439 RTL9Q8NET4 1388 aa23.08■■□□□ 1.29
CIITA-215ENST00000637439 ELL2O00472 640 aaPredicted RBP23.07■■□□□ 1.28
CIITA-215ENST00000637439 UFL1O94874 794 aa23.07■■□□□ 1.28
CIITA-215ENST00000637439 VIL1P09327 827 aaKnown RBP23.07■■□□□ 1.28
CIITA-215ENST00000637439 C2orf69Q8N8R5 385 aa23.07■■□□□ 1.28
CIITA-215ENST00000637439 SEC31BQ9NQW1 1179 aa23.07■■□□□ 1.28
CIITA-215ENST00000637439 KCNQ5Q9NR82 932 aa23.07■■□□□ 1.28
CIITA-215ENST00000637439 CWC25Q9NXE8 425 aaPredicted RBP23.07■■□□□ 1.28
CIITA-215ENST00000637439 RBM26Q5T8P6 1007 aaKnown RBP23.06■■□□□ 1.28
CIITA-215ENST00000637439 CCDC30Q5VVM6 783 aa23.06■■□□□ 1.28
CIITA-215ENST00000637439 EGFRP00533 1210 aa23.05■■□□□ 1.28
CIITA-215ENST00000637439 KIF4BQ2VIQ3 1234 aa23.05■■□□□ 1.28
CIITA-215ENST00000637439 METTL22Q9BUU2 404 aaPredicted RBP23.05■■□□□ 1.28
CIITA-215ENST00000637439 GBA2Q9HCG7 927 aaPredicted RBP23.05■■□□□ 1.28
CIITA-215ENST00000637439 POLR2AP24928 1970 aaKnown RBP23.04■■□□□ 1.28
CIITA-215ENST00000637439 RGMBQ6NW40 437 aa23.04■■□□□ 1.28
CIITA-215ENST00000637439 ZNF609O15014 1411 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 ANKRD18AQ8IVF6 992 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 SULF1Q8IWU6 871 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 C8orf58Q8NAV2 365 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 AGBL3Q8NEM8 1001 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 CCDC102AQ96A19 550 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 SCN9AQ15858 1988 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 XDHP47989 1333 aa23.03■■□□□ 1.28
CIITA-215ENST00000637439 CCDC85CA6NKD9 419 aa23.02■■□□□ 1.28
CIITA-215ENST00000637439 ADM5C9JUS6 153 aa23.02■■□□□ 1.28
CIITA-215ENST00000637439 RSBN1LQ6PCB5 846 aaPredicted RBP23.01■■□□□ 1.27
CIITA-215ENST00000637439 DLK2Q6UY11 383 aa23.01■■□□□ 1.27
CIITA-215ENST00000637439 CDC5LQ99459 802 aaKnown RBP23.01■■□□□ 1.27
CIITA-215ENST00000637439 GGA3Q9NZ52 723 aa23.01■■□□□ 1.27
CIITA-215ENST00000637439 ATP2B4P23634 1241 aa23■■□□□ 1.27
CIITA-215ENST00000637439 ZNF280AP59817 542 aaPredicted RBP23■■□□□ 1.27
CIITA-215ENST00000637439 MAP3K2Q9Y2U5 619 aa23■■□□□ 1.27
CIITA-215ENST00000637439 PSME4Q14997 1843 aa22.99■■□□□ 1.27
CIITA-215ENST00000637439 FAM155AB1AL88 458 aaPredicted RBP22.99■■□□□ 1.27
CIITA-215ENST00000637439 ZNF157P51786 506 aaPredicted RBP22.99■■□□□ 1.27
CIITA-215ENST00000637439 KSR2Q6VAB6 950 aa22.99■■□□□ 1.27
CIITA-215ENST00000637439 PODNQ7Z5L7 613 aa22.99■■□□□ 1.27
CIITA-215ENST00000637439 JARID2Q92833 1246 aaPredicted RBP22.99■■□□□ 1.27
CIITA-215ENST00000637439 CCDC85AQ96PX6 553 aaPredicted RBP22.99■■□□□ 1.27
CIITA-215ENST00000637439 CASP8AP2Q9UKL3 1982 aa22.99■■□□□ 1.27
CIITA-215ENST00000637439 CTSWP56202 376 aa22.98■■□□□ 1.27
CIITA-215ENST00000637439 NEXNQ0ZGT2 675 aa22.98■■□□□ 1.27
CIITA-215ENST00000637439 ZIC5Q96T25 663 aa22.98■■□□□ 1.27
CIITA-215ENST00000637439 STK31Q9BXU1 1019 aa22.98■■□□□ 1.27
CIITA-215ENST00000637439 MCOLN1Q9GZU1 580 aa22.98■■□□□ 1.27
CIITA-215ENST00000637439 SAGE1Q9NXZ1 904 aa22.98■■□□□ 1.27
CIITA-215ENST00000637439 RGS19P49795 217 aa22.97■■□□□ 1.27
CIITA-215ENST00000637439 FAM161AQ3B820 660 aa22.97■■□□□ 1.27
CIITA-215ENST00000637439 PI4KAP2A4QPH2 592 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 USP17L3A6NCW0 530 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 USP17L4A6NCW7 530 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 USP17L8P0C7I0 530 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 SCARF1Q14162 830 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 USP17L1Q7RTZ2 530 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 PI4KAP1Q8N8J0 262 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 CDCA5Q96FF9 252 aa22.96■■□□□ 1.27
CIITA-215ENST00000637439 MYH3P11055 1940 aa22.95■■□□□ 1.26
CIITA-215ENST00000637439 KIF23Q02241 960 aaPredicted RBP22.95■■□□□ 1.26
CIITA-215ENST00000637439 MLLT1Q03111 559 aaPredicted RBP22.95■■□□□ 1.26
CIITA-215ENST00000637439 DGKZQ13574 1117 aa22.95■■□□□ 1.26
CIITA-215ENST00000637439 ANGEL2Q5VTE6 544 aaKnown RBP22.95■■□□□ 1.26
CIITA-215ENST00000637439 TSPYL6Q8N831 410 aa22.95■■□□□ 1.26
CIITA-215ENST00000637439 TTLL11Q8NHH1 800 aa22.95■■□□□ 1.26
CIITA-215ENST00000637439 GMLQ99445 158 aa22.95■■□□□ 1.26
CIITA-215ENST00000637439 PITPNM2Q9BZ72 1349 aa22.95■■□□□ 1.26
CIITA-215ENST00000637439 MYOZ2Q9NPC6 264 aa22.95■■□□□ 1.26
CIITA-215ENST00000637439 BSDC1Q9NW68 430 aaPredicted RBP22.95■■□□□ 1.26
CIITA-215ENST00000637439 MED23Q9ULK4 1368 aa22.94■■□□□ 1.26
CIITA-215ENST00000637439 ASTN2O75129 1339 aaPredicted RBP22.94■■□□□ 1.26
CIITA-215ENST00000637439 IGKV5-2P06315 115 aa22.94■■□□□ 1.26
CIITA-215ENST00000637439 SLC10A3P09131 477 aa22.94■■□□□ 1.26
CIITA-215ENST00000637439 FKBP1BP68106 108 aa22.94■■□□□ 1.26
CIITA-215ENST00000637439 REM2Q8IYK8 340 aaPredicted RBP22.94■■□□□ 1.26
CIITA-215ENST00000637439 MINPP1Q9UNW1 487 aa22.93■■□□□ 1.26
CIITA-215ENST00000637439 CCDC27Q2M243 656 aa22.92■■□□□ 1.26
CIITA-215ENST00000637439 AKAP11Q9UKA4 1901 aa22.92■■□□□ 1.26
CIITA-215ENST00000637439 NEURL1BA8MQ27 555 aa22.91■■□□□ 1.26
CIITA-215ENST00000637439 TSR2Q969E8 191 aaKnown RBP22.91■■□□□ 1.26
CIITA-215ENST00000637439 GREM2Q9H772 168 aa22.91■■□□□ 1.26
CIITA-215ENST00000637439 MYO3BQ8WXR4 1341 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms