RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 NSFL1CQ9UNZ2 370 aaKnown RBP9.59□□□□□ -0.87
CIITA-214ENST00000636238 ZBTB12Q9Y330 459 aaPredicted RBP9.59□□□□□ -0.87
CIITA-214ENST00000636238 DUOX1Q9NRD9 1551 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 MAPK8IP3Q9UPT6 1336 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 KDM3BQ7LBC6 1761 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 ADM5C9JUS6 153 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 ECE2O60344 883 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 ALDH1A1P00352 501 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 HCLS1P14317 486 aaPredicted RBP9.58□□□□□ -0.88
CIITA-214ENST00000636238 TM4SF4P48230 202 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 SREBF2Q12772 1141 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 INTS3Q68E01 1043 aaKnown RBP9.58□□□□□ -0.88
CIITA-214ENST00000636238 ZC3H12CQ9C0D7 883 aaKnown RBP9.58□□□□□ -0.88
CIITA-214ENST00000636238 SALL2Q9Y467 1007 aaPredicted RBP9.58□□□□□ -0.88
CIITA-214ENST00000636238 RTL9Q8NET4 1388 aa9.58□□□□□ -0.88
CIITA-214ENST00000636238 LRRC37AA6NMS7 1700 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 SHTN1A0MZ66 631 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 C6orf229H3BNL8 230 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 RSBN1LQ6PCB5 846 aaPredicted RBP9.57□□□□□ -0.88
CIITA-214ENST00000636238 COPS6Q7L5N1 327 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 SLC51AQ86UW1 340 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 CCDC146Q8IYE0 955 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 PLBD2Q8NHP8 589 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 TBC1D16Q8TBP0 767 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 DBNDD1Q9H9R9 158 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 POLLQ9UGP5 575 aa9.57□□□□□ -0.88
CIITA-214ENST00000636238 NUP98P52948 1817 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 UNCXA6NJT0 531 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 GPR25O00155 361 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 EGFRP00533 1210 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 NF2P35240 595 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 INHBEP58166 350 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 RPS8P62241 208 aaKnown RBP9.56□□□□□ -0.88
CIITA-214ENST00000636238 PODNQ7Z5L7 613 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 XAGE3Q8WTP9 111 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 ZNF296Q8WUU4 475 aaPredicted RBP9.56□□□□□ -0.88
CIITA-214ENST00000636238 ISCA1Q9BUE6 129 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 MYO3BQ8WXR4 1341 aa9.56□□□□□ -0.88
CIITA-214ENST00000636238 CASP8AP2Q9UKL3 1982 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 PAPPA2Q9BXP8 1791 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 G3V3G9 751 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 FKTNO75072 461 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 USP17L8P0C7I0 530 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 EIF2S2P20042 333 aaKnown RBP9.55□□□□□ -0.88
CIITA-214ENST00000636238 GPSM2P81274 684 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 SCARF1Q14162 830 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 PROSER3Q2NL68 480 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 RBM26Q5T8P6 1007 aaKnown RBP9.55□□□□□ -0.88
CIITA-214ENST00000636238 DCAF8Q5TAQ9 597 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 ANGEL2Q5VTE6 544 aaKnown RBP9.55□□□□□ -0.88
CIITA-214ENST00000636238 CELF1Q92879 486 aaKnown RBP9.55□□□□□ -0.88
CIITA-214ENST00000636238 GMLQ99445 158 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 GGA1Q9UJY5 639 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 ANKRD36CQ5JPF3 1778 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 ZBED9Q6R2W3 1325 aa9.55□□□□□ -0.88
CIITA-214ENST00000636238 RIMBP2O15034 1052 aa9.54□□□□□ -0.88
CIITA-214ENST00000636238 ANKRD13DQ6ZTN6 518 aa9.54□□□□□ -0.88
CIITA-214ENST00000636238 THUMPD2Q9BTF0 503 aaKnown RBP9.54□□□□□ -0.88
CIITA-214ENST00000636238 CHMP4AQ9BY43 222 aa9.54□□□□□ -0.88
CIITA-214ENST00000636238 MYOZ2Q9NPC6 264 aa9.54□□□□□ -0.88
CIITA-214ENST00000636238 DBF4Q9UBU7 674 aaPredicted RBP9.54□□□□□ -0.88
CIITA-214ENST00000636238 XDHP47989 1333 aa9.54□□□□□ -0.88
CIITA-214ENST00000636238 USP17L3A6NCW0 530 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 USP17L4A6NCW7 530 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 IRS4O14654 1257 aaPredicted RBP9.53□□□□□ -0.88
CIITA-214ENST00000636238 DOK7Q18PE1 504 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 CCDC152Q4G0S7 254 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 HABP4Q5JVS0 413 aaKnown RBP9.53□□□□□ -0.88
CIITA-214ENST00000636238 DLK2Q6UY11 383 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 USP17L1Q7RTZ2 530 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 ARMC9Q7Z3E5 817 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 OGFOD1Q8N543 542 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 HYPKQ9NX55 129 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 ANKIB1Q9P2G1 1089 aa9.53□□□□□ -0.88
CIITA-214ENST00000636238 DDX60Q8IY21 1712 aaKnown RBP9.53□□□□□ -0.88
CIITA-214ENST00000636238 COL1A1P02452 1464 aaPredicted RBP9.53□□□□□ -0.88
CIITA-214ENST00000636238 CHL1O00533 1208 aa9.52□□□□□ -0.89
CIITA-214ENST00000636238 UFL1O94874 794 aa9.52□□□□□ -0.89
CIITA-214ENST00000636238 ATP2B4P23634 1241 aa9.52□□□□□ -0.89
CIITA-214ENST00000636238 AIMP1Q12904 312 aaKnown RBP9.52□□□□□ -0.89
CIITA-214ENST00000636238 ZBTB38Q8NAP3 1195 aaPredicted RBP9.52□□□□□ -0.89
CIITA-214ENST00000636238 FAM89AQ96GI7 184 aa9.52□□□□□ -0.89
CIITA-214ENST00000636238 DLG5Q8TDM6 1919 aa9.51□□□□□ -0.89
CIITA-214ENST00000636238 MANSC4A6NHS7 340 aaPredicted RBP9.51□□□□□ -0.89
CIITA-214ENST00000636238 APAF1O14727 1248 aa9.51□□□□□ -0.89
CIITA-214ENST00000636238 TBC1D8O95759 1140 aa9.51□□□□□ -0.89
CIITA-214ENST00000636238 ZBTB48P10074 688 aaPredicted RBP9.51□□□□□ -0.89
CIITA-214ENST00000636238 RIPK4P57078 832 aa9.51□□□□□ -0.89
CIITA-214ENST00000636238 LDLRAD1Q5T700 205 aa9.51□□□□□ -0.89
CIITA-214ENST00000636238 APOBEC3FQ8IUX4 373 aaKnown RBP9.51□□□□□ -0.89
CIITA-214ENST00000636238 KCNQ5Q9NR82 932 aa9.51□□□□□ -0.89
CIITA-214ENST00000636238 MED23Q9ULK4 1368 aa9.5□□□□□ -0.89
CIITA-214ENST00000636238 UBE2Q2LH0YL09 131 aa9.5□□□□□ -0.89
CIITA-214ENST00000636238 ANXA1P04083 346 aa9.5□□□□□ -0.89
CIITA-214ENST00000636238 PCCAP05165 728 aaPredicted RBP9.5□□□□□ -0.89
CIITA-214ENST00000636238 ARHGEF6Q15052 776 aa9.5□□□□□ -0.89
CIITA-214ENST00000636238 MAP3K11Q16584 847 aa9.5□□□□□ -0.89
CIITA-214ENST00000636238 HDGFL1Q5TGJ6 251 aa9.5□□□□□ -0.89
CIITA-214ENST00000636238 STRIP1Q5VSL9 837 aa9.5□□□□□ -0.89
CIITA-214ENST00000636238 CCDC191Q8NCU4 936 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms