RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PCCAP05165 728 aaPredicted RBP22.9■■□□□ 1.26
CLN3-243ENST00000635973 RPS8P62241 208 aaKnown RBP22.9■■□□□ 1.26
CLN3-243ENST00000635973 BEND3Q5T5X7 828 aa22.9■■□□□ 1.26
CLN3-243ENST00000635973 FRAT1Q92837 279 aaPredicted RBP22.9■■□□□ 1.26
CLN3-243ENST00000635973 API5Q9BZZ5 524 aaKnown RBP22.9■■□□□ 1.26
CLN3-243ENST00000635973 ADARB2Q9NS39 739 aaKnown RBP22.9■■□□□ 1.26
CLN3-243ENST00000635973 GPRC5DQ9NZD1 345 aa22.9■■□□□ 1.26
CLN3-243ENST00000635973 RAD17O75943 681 aa22.89■■□□□ 1.25
CLN3-243ENST00000635973 GCKRQ14397 625 aa22.89■■□□□ 1.25
CLN3-243ENST00000635973 CCDC152Q4G0S7 254 aa22.89■■□□□ 1.25
CLN3-243ENST00000635973 JARID2Q92833 1246 aaPredicted RBP22.89■■□□□ 1.25
CLN3-243ENST00000635973 EYA3Q99504 573 aa22.89■■□□□ 1.25
CLN3-243ENST00000635973 SRCIN1Q9C0H9 1055 aa22.89■■□□□ 1.25
CLN3-243ENST00000635973 CNTNAP1P78357 1384 aa22.89■■□□□ 1.25
CLN3-243ENST00000635973 RIMBP2O15034 1052 aa22.88■■□□□ 1.25
CLN3-243ENST00000635973 IPO8O15397 1037 aaKnown RBP22.88■■□□□ 1.25
CLN3-243ENST00000635973 PDE8AO60658 829 aa22.88■■□□□ 1.25
CLN3-243ENST00000635973 GMPSP49915 693 aaPredicted RBP22.88■■□□□ 1.25
CLN3-243ENST00000635973 ABT1Q9ULW3 272 aaKnown RBP22.88■■□□□ 1.25
CLN3-243ENST00000635973 GPSM2P81274 684 aa22.87■■□□□ 1.25
CLN3-243ENST00000635973 UBE3BQ7Z3V4 1068 aa22.87■■□□□ 1.25
CLN3-243ENST00000635973 G3V3G9 751 aa22.86■■□□□ 1.25
CLN3-243ENST00000635973 ALDH1L1O75891 902 aa22.86■■□□□ 1.25
CLN3-243ENST00000635973 DCAF8Q5TAQ9 597 aa22.86■■□□□ 1.25
CLN3-243ENST00000635973 CDHR2Q9BYE9 1310 aa22.85■■□□□ 1.25
CLN3-243ENST00000635973 DUOX1Q9NRD9 1551 aa22.85■■□□□ 1.25
CLN3-243ENST00000635973 ARHGAP45Q92619 1136 aa22.85■■□□□ 1.25
CLN3-243ENST00000635973 CCDC85AQ96PX6 553 aaPredicted RBP22.85■■□□□ 1.25
CLN3-243ENST00000635973 C9orf78Q9NZ63 289 aaPredicted RBP22.85■■□□□ 1.25
CLN3-243ENST00000635973 ANKIB1Q9P2G1 1089 aa22.85■■□□□ 1.25
CLN3-243ENST00000635973 TRPM7Q96QT4 1865 aa22.85■■□□□ 1.25
CLN3-243ENST00000635973 H7C1D1 291 aa22.84■■□□□ 1.25
CLN3-243ENST00000635973 DEFB115Q30KQ5 88 aa22.84■■□□□ 1.25
CLN3-243ENST00000635973 ZC3H12CQ9C0D7 883 aaKnown RBP22.84■■□□□ 1.25
CLN3-243ENST00000635973 DBNDD1Q9H9R9 158 aa22.84■■□□□ 1.25
CLN3-243ENST00000635973 SEC31BQ9NQW1 1179 aa22.84■■□□□ 1.25
CLN3-243ENST00000635973 POLLQ9UGP5 575 aa22.84■■□□□ 1.25
CLN3-243ENST00000635973 MYH3P11055 1940 aa22.84■■□□□ 1.25
CLN3-243ENST00000635973 GRM8O00222 908 aa22.83■■□□□ 1.25
CLN3-243ENST00000635973 ZKSCAN2Q63HK3 967 aa22.83■■□□□ 1.25
CLN3-243ENST00000635973 CNOT7Q9UIV1 285 aaKnown RBP22.83■■□□□ 1.25
CLN3-243ENST00000635973 RCAN3Q9UKA8 241 aa22.83■■□□□ 1.25
CLN3-243ENST00000635973 YDJCA8MPS7 323 aa22.82■■□□□ 1.24
CLN3-243ENST00000635973 H7C1W4 665 aa22.82■■□□□ 1.24
CLN3-243ENST00000635973 VEGFBP49765 207 aa22.82■■□□□ 1.24
CLN3-243ENST00000635973 CCT4P50991 539 aaKnown RBP22.82■■□□□ 1.24
CLN3-243ENST00000635973 ATF7IPQ6VMQ6 1270 aa22.82■■□□□ 1.24
CLN3-243ENST00000635973 ANKRD18AQ8IVF6 992 aa22.82■■□□□ 1.24
CLN3-243ENST00000635973 TBC1D16Q8TBP0 767 aa22.82■■□□□ 1.24
CLN3-243ENST00000635973 AIDAQ96BJ3 306 aa22.82■■□□□ 1.24
CLN3-243ENST00000635973 ECE2O60344 883 aa22.81■■□□□ 1.24
CLN3-243ENST00000635973 UFL1O94874 794 aa22.81■■□□□ 1.24
CLN3-243ENST00000635973 TRIM27P14373 513 aa22.81■■□□□ 1.24
CLN3-243ENST00000635973 DOK7Q18PE1 504 aa22.81■■□□□ 1.24
CLN3-243ENST00000635973 PAXIP1Q6ZW49 1069 aaPredicted RBP22.81■■□□□ 1.24
CLN3-243ENST00000635973 GGA1Q9UJY5 639 aa22.81■■□□□ 1.24
CLN3-243ENST00000635973 COL4A1P02462 1669 aa22.81■■□□□ 1.24
CLN3-243ENST00000635973 FTSJ3Q8IY81 847 aaKnown RBP22.8■■□□□ 1.24
CLN3-243ENST00000635973 CLUAP1Q96AJ1 413 aa22.8■■□□□ 1.24
CLN3-243ENST00000635973 CDC5LQ99459 802 aaKnown RBP22.8■■□□□ 1.24
CLN3-243ENST00000635973 RASSF10A6NK89 507 aa22.79■■□□□ 1.24
CLN3-243ENST00000635973 PSMD14O00487 310 aa22.79■■□□□ 1.24
CLN3-243ENST00000635973 CTSWP56202 376 aa22.79■■□□□ 1.24
CLN3-243ENST00000635973 MICALL2Q8IY33 904 aa22.79■■□□□ 1.24
CLN3-243ENST00000635973 GPR101Q96P66 508 aaPredicted RBP22.79■■□□□ 1.24
CLN3-243ENST00000635973 PODXL2Q9NZ53 605 aa22.79■■□□□ 1.24
CLN3-243ENST00000635973 ZBTB12Q9Y330 459 aaPredicted RBP22.79■■□□□ 1.24
CLN3-243ENST00000635973 TRAF5O00463 557 aa22.78■■□□□ 1.24
CLN3-243ENST00000635973 ZC3H15Q8WU90 426 aaKnown RBP22.78■■□□□ 1.24
CLN3-243ENST00000635973 SPEF2Q9C093 1822 aa22.78■■□□□ 1.24
CLN3-243ENST00000635973 FOXN1O15353 648 aa22.77■■□□□ 1.24
CLN3-243ENST00000635973 CASP7P55210 303 aa22.77■■□□□ 1.24
CLN3-243ENST00000635973 FMR1Q06787 632 aaKnown RBP eCLIP22.77■■□□□ 1.24
CLN3-243ENST00000635973 DPF2Q92785 391 aa22.77■■□□□ 1.24
CLN3-243ENST00000635973 RPS12P25398 132 aaKnown RBP22.76■■□□□ 1.23
CLN3-243ENST00000635973 ECE1P42892 770 aa22.76■■□□□ 1.23
CLN3-243ENST00000635973 PLA2G12BQ9BX93 195 aa22.76■■□□□ 1.23
CLN3-243ENST00000635973 TNNQ9UQP3 1299 aa22.76■■□□□ 1.23
CLN3-243ENST00000635973 XDHP47989 1333 aa22.76■■□□□ 1.23
CLN3-243ENST00000635973 WDR33Q9C0J8 1336 aaKnown RBP22.76■■□□□ 1.23
CLN3-243ENST00000635973 GRM1Q13255 1194 aa22.75■■□□□ 1.23
CLN3-243ENST00000635973 CDC37L1Q7L3B6 337 aa22.75■■□□□ 1.23
CLN3-243ENST00000635973 TTLL11Q8NHH1 800 aa22.75■■□□□ 1.23
CLN3-243ENST00000635973 TRPM4Q8TD43 1214 aa22.75■■□□□ 1.23
CLN3-243ENST00000635973 GLIS2Q9BZE0 524 aaPredicted RBP22.75■■□□□ 1.23
CLN3-243ENST00000635973 CELF2O95319 508 aaKnown RBP22.74■■□□□ 1.23
CLN3-243ENST00000635973 NBPF7P0C2Y1 421 aaPredicted RBP22.74■■□□□ 1.23
CLN3-243ENST00000635973 ATP2B4P23634 1241 aa22.74■■□□□ 1.23
CLN3-243ENST00000635973 HIRAP54198 1017 aaPredicted RBP22.74■■□□□ 1.23
CLN3-243ENST00000635973 INTS3Q68E01 1043 aaKnown RBP22.74■■□□□ 1.23
CLN3-243ENST00000635973 ZNF408Q9H9D4 720 aa22.74■■□□□ 1.23
CLN3-243ENST00000635973 PGAP2Q9UHJ9 254 aa22.74■■□□□ 1.23
CLN3-243ENST00000635973 CHMP3Q9Y3E7 222 aa22.74■■□□□ 1.23
CLN3-243ENST00000635973 SHTN1A0MZ66 631 aa22.73■■□□□ 1.23
CLN3-243ENST00000635973 MAP2K1Q02750 393 aaPredicted RBP22.73■■□□□ 1.23
CLN3-243ENST00000635973 TBC1D10BQ4KMP7 808 aaPredicted RBP22.73■■□□□ 1.23
CLN3-243ENST00000635973 RBM26Q5T8P6 1007 aaKnown RBP22.73■■□□□ 1.23
CLN3-243ENST00000635973 CST9Q5W186 159 aa22.73■■□□□ 1.23
CLN3-243ENST00000635973 SAMD7Q7Z3H4 446 aa22.73■■□□□ 1.23
CLN3-243ENST00000635973 DZIP1LQ8IYY4 767 aaKnown RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms