RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	HSPA1B	P0DMV9	641 aa	Known RBP	11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	TCIRG1	Q13488	830 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	CHRDL2	Q6WN34	429 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	UBE3B	Q7Z3V4	1068 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	PLEKHM2	Q8IWE5	1019 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	RTKN2	Q8IZC4	609 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	C7orf43	Q8WVR3	580 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	APBB1	O00213	710 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	DDN	O94850	711 aa	Predicted RBP	11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	LDHD	Q86WU2	507 aa		11.76	□□□□□ -0.53
PDLIM5-223	ENST00000627587	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
PDLIM5-223	ENST00000627587	TRIM28	Q13263	835 aa	Known RBP	11.75	□□□□□ -0.53
PDLIM5-223	ENST00000627587	RABL6	Q3YEC7	729 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM5-223	ENST00000627587	CCDC191	Q8NCU4	936 aa		11.75	□□□□□ -0.53
PDLIM5-223	ENST00000627587	NOP58	Q9Y2X3	529 aa	Known RBP	11.75	□□□□□ -0.53
PDLIM5-223	ENST00000627587	SLX4	Q8IY92	1834 aa		11.75	□□□□□ -0.53
PDLIM5-223	ENST00000627587	SCN4A	P35499	1836 aa		11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	FOXO4	P98177	505 aa		11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	GRIPAP1	Q4V328	841 aa		11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	CC2D2B	Q6DHV5	1058 aa		11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	KIF6	Q6ZMV9	814 aa		11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	CWC25	Q9NXE8	425 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	COL11A2	P13942	1736 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	SEC24B	O95487	1268 aa		11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	GTF2E1	P29083	439 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	NYX	Q9GZU5	481 aa		11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	PA2G4	Q9UQ80	394 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	DDX60	Q8IY21	1712 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM5-223	ENST00000627587	UBN2	Q6ZU65	1347 aa		11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	ERVV-1	B6SEH8	477 aa		11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	SURF6	O75683	361 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	GSPT1	P15170	499 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	RFX5	P48382	616 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	PNMA8A	Q86V59	439 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	LRRCC1	Q9C099	1032 aa		11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	LAMB2	P55268	1798 aa		11.73	□□□□□ -0.53
PDLIM5-223	ENST00000627587	BMP2KL	Q5H9B9	411 aa		11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	RTL5	Q5HYW3	569 aa	Predicted RBP	11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	NLRP10	Q86W26	655 aa		11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	HACL1	Q9UJ83	578 aa		11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	ZNF34	Q8IZ26	560 aa		11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	SYNE4	Q8N205	404 aa		11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	KLHDC4	Q8TBB5	520 aa		11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	RHPN1	Q8TCX5	695 aa		11.72	□□□□□ -0.53
PDLIM5-223	ENST00000627587	PASK	Q96RG2	1323 aa		11.71	□□□□□ -0.53
PDLIM5-223	ENST00000627587	TMEM88B	A6NKF7	163 aa		11.71	□□□□□ -0.53
PDLIM5-223	ENST00000627587	RAB11FIP3	O75154	756 aa		11.71	□□□□□ -0.53
PDLIM5-223	ENST00000627587	GPT	P24298	496 aa		11.71	□□□□□ -0.53
PDLIM5-223	ENST00000627587	OSBPL3	Q9H4L5	887 aa		11.71	□□□□□ -0.53
PDLIM5-223	ENST00000627587	IL1RAPL2	Q9NP60	686 aa		11.71	□□□□□ -0.53
PDLIM5-223	ENST00000627587	AK9	Q5TCS8	1911 aa		11.71	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CACNA1S	Q13698	1873 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CNTNAP1	P78357	1384 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	FZD9	O00144	591 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	SASH1	O94885	1247 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PCCA	P05165	728 aa	Predicted RBP	11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	IARS	P41252	1262 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PDE1A	P54750	535 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PTPN12	Q05209	780 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	HSP90AB3P	Q58FF7	597 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	TTC22	Q5TAA0	569 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	GPC2	Q8N158	579 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	JDP2	Q8WYK2	163 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PSMD1	Q99460	953 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	BCL11A	Q9H165	835 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PRDM10	Q9NQV6	1147 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	MKRN1	Q9UHC7	482 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CLEC11A	Q9Y240	323 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	ITGBL1	O95965	494 aa	Predicted RBP	11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	HSP90AB4P	Q58FF6	505 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	LMBR1L	Q6UX01	489 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	AIDA	Q96BJ3	306 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	KIF1BP	Q96EK5	621 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	FAM89A	Q96GI7	184 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	COPRS	Q9NQ92	184 aa		11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.7	□□□□□ -0.54
PDLIM5-223	ENST00000627587	POTEI	P0CG38	1075 aa		11.69	□□□□□ -0.54
PDLIM5-223	ENST00000627587	POTEJ	P0CG39	1038 aa		11.69	□□□□□ -0.54
PDLIM5-223	ENST00000627587	EPHX2	P34913	555 aa		11.69	□□□□□ -0.54
PDLIM5-223	ENST00000627587	TSHZ3	Q63HK5	1081 aa		11.69	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PLA2G12B	Q9BX93	195 aa		11.69	□□□□□ -0.54
PDLIM5-223	ENST00000627587	STAP2	Q9UGK3	403 aa		11.69	□□□□□ -0.54
PDLIM5-223	ENST00000627587	HOXA10	P31260	410 aa	Predicted RBP	11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CTCF	P49711	727 aa	Predicted RBP	11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	EIF6	P56537	245 aa	Known RBP	11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CRY2	Q49AN0	593 aa		11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	EAPP	Q56P03	285 aa	Predicted RBP	11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CDHR2	Q9BYE9	1310 aa		11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	FAM177B	A6PVY3	158 aa		11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	MX1	P20591	662 aa		11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	RIC1	Q4ADV7	1423 aa		11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	RPGR	Q92834	1020 aa	Known RBP	11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	SIL1	Q9H173	461 aa		11.68	□□□□□ -0.54

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