RNA–Protein interactions for RNA: ENST00000626466.1

TCF4-253, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-253	ENST00000626466	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.91	□□□□□ -0.18
TCF4-253	ENST00000626466	ATP5J2-PTCD1	G3V325	749 aa		13.9	□□□□□ -0.18
TCF4-253	ENST00000626466	TMPO	P42166	694 aa	Known RBP	13.9	□□□□□ -0.18
TCF4-253	ENST00000626466	DPF2	Q92785	391 aa		13.9	□□□□□ -0.18
TCF4-253	ENST00000626466	GGA3	Q9NZ52	723 aa		13.9	□□□□□ -0.18
TCF4-253	ENST00000626466	C6orf229	H3BNL8	230 aa		13.89	□□□□□ -0.19
TCF4-253	ENST00000626466	KIF4B	Q2VIQ3	1234 aa		13.89	□□□□□ -0.19
TCF4-253	ENST00000626466	ISCA1	Q9BUE6	129 aa		13.89	□□□□□ -0.19
TCF4-253	ENST00000626466	RNF186	Q9NXI6	227 aa		13.89	□□□□□ -0.19
TCF4-253	ENST00000626466	SCN9A	Q15858	1988 aa		13.89	□□□□□ -0.19
TCF4-253	ENST00000626466	TRPA1	O75762	1119 aa		13.88	□□□□□ -0.19
TCF4-253	ENST00000626466	SLC10A3	P09131	477 aa		13.88	□□□□□ -0.19
TCF4-253	ENST00000626466	ZNF157	P51786	506 aa	Predicted RBP	13.88	□□□□□ -0.19
TCF4-253	ENST00000626466	SF3B3	Q15393	1217 aa	Known RBP	13.88	□□□□□ -0.19
TCF4-253	ENST00000626466	CCDC146	Q8IYE0	955 aa		13.88	□□□□□ -0.19
TCF4-253	ENST00000626466	TBC1D16	Q8TBP0	767 aa		13.88	□□□□□ -0.19
TCF4-253	ENST00000626466	SCAF8	Q9UPN6	1271 aa	Known RBP	13.88	□□□□□ -0.19
TCF4-253	ENST00000626466	CHL1	O00533	1208 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	TMC4	Q7Z404	712 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	C2orf69	Q8N8R5	385 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	PLBD2	Q8NHP8	589 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	DCPS	Q96C86	337 aa	Known RBP	13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	CDCA5	Q96FF9	252 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	CSRNP1	Q96S65	589 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	SEC31B	Q9NQW1	1179 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	BABAM1	Q9NWV8	329 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	SAGE1	Q9NXZ1	904 aa		13.87	□□□□□ -0.19
TCF4-253	ENST00000626466	RPS12	P25398	132 aa	Known RBP	13.86	□□□□□ -0.19
TCF4-253	ENST00000626466	NEUROD2	Q15784	382 aa		13.86	□□□□□ -0.19
TCF4-253	ENST00000626466	HDGFL1	Q5TGJ6	251 aa		13.86	□□□□□ -0.19
TCF4-253	ENST00000626466	MOB2	Q70IA6	237 aa		13.86	□□□□□ -0.19
TCF4-253	ENST00000626466	RASAL3	Q86YV0	1011 aa		13.86	□□□□□ -0.19
TCF4-253	ENST00000626466	TRIM35	Q9UPQ4	493 aa		13.86	□□□□□ -0.19
TCF4-253	ENST00000626466	LAS1L	Q9Y4W2	734 aa	Known RBP	13.86	□□□□□ -0.19
TCF4-253	ENST00000626466	IRS4	O14654	1257 aa	Predicted RBP	13.85	□□□□□ -0.19
TCF4-253	ENST00000626466	VIL1	P09327	827 aa	Known RBP	13.85	□□□□□ -0.19
TCF4-253	ENST00000626466	JARID2	Q92833	1246 aa	Predicted RBP	13.85	□□□□□ -0.19
TCF4-253	ENST00000626466	CCDC102A	Q96A19	550 aa		13.85	□□□□□ -0.19
TCF4-253	ENST00000626466	WTIP	A6NIX2	430 aa	Predicted RBP	13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	UFL1	O94874	794 aa		13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	RPS8	P62241	208 aa	Known RBP	13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	ANGEL2	Q5VTE6	544 aa	Known RBP	13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	ANKRD13D	Q6ZTN6	518 aa		13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	SULF1	Q8IWU6	871 aa		13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	PNN	Q9H307	717 aa	Known RBP	13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.84	□□□□□ -0.19
TCF4-253	ENST00000626466	POLR2A	P24928	1970 aa	Known RBP	13.83	□□□□□ -0.19
TCF4-253	ENST00000626466	ZNF280A	P59817	542 aa	Predicted RBP	13.83	□□□□□ -0.2
TCF4-253	ENST00000626466	PRAMEF18	Q5VWM3	479 aa		13.83	□□□□□ -0.2
TCF4-253	ENST00000626466	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.83	□□□□□ -0.2
TCF4-253	ENST00000626466	EYA3	Q99504	573 aa		13.83	□□□□□ -0.2
TCF4-253	ENST00000626466	DSG3	P32926	999 aa		13.82	□□□□□ -0.2
TCF4-253	ENST00000626466	LMOD3	Q0VAK6	560 aa		13.82	□□□□□ -0.2
TCF4-253	ENST00000626466	SCARF1	Q14162	830 aa		13.82	□□□□□ -0.2
TCF4-253	ENST00000626466	CTU1	Q7Z7A3	348 aa	Known RBP	13.82	□□□□□ -0.2
TCF4-253	ENST00000626466	GML	Q99445	158 aa		13.82	□□□□□ -0.2
TCF4-253	ENST00000626466	PODXL2	Q9NZ53	605 aa		13.82	□□□□□ -0.2
TCF4-253	ENST00000626466	TNRC18	O15417	2968 aa	Predicted RBP	13.82	□□□□□ -0.2
TCF4-253	ENST00000626466	ZNF609	O15014	1411 aa		13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	PAPPA2	Q9BXP8	1791 aa		13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	DUSP27	Q5VZP5	1158 aa		13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	MXD3	Q9BW11	206 aa		13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	PHAX	Q9H814	394 aa	Known RBP	13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	HPS5	Q9UPZ3	1129 aa		13.81	□□□□□ -0.2
TCF4-253	ENST00000626466	UBE2Q2L	H0YL09	131 aa		13.8	□□□□□ -0.2
TCF4-253	ENST00000626466	TBC1D8	O95759	1140 aa		13.8	□□□□□ -0.2
TCF4-253	ENST00000626466	TRIM28	Q13263	835 aa	Known RBP	13.8	□□□□□ -0.2
TCF4-253	ENST00000626466	ANKIB1	Q9P2G1	1089 aa		13.8	□□□□□ -0.2
TCF4-253	ENST00000626466	DBF4	Q9UBU7	674 aa	Predicted RBP	13.8	□□□□□ -0.2
TCF4-253	ENST00000626466	GGA1	Q9UJY5	639 aa		13.8	□□□□□ -0.2
TCF4-253	ENST00000626466	HOXB7	P09629	217 aa		13.79	□□□□□ -0.2
TCF4-253	ENST00000626466	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.79	□□□□□ -0.2
TCF4-253	ENST00000626466	AGBL3	Q8NEM8	1001 aa		13.79	□□□□□ -0.2
TCF4-253	ENST00000626466	MYD88	Q99836	296 aa		13.79	□□□□□ -0.2
TCF4-253	ENST00000626466	MYOZ2	Q9NPC6	264 aa		13.79	□□□□□ -0.2
TCF4-253	ENST00000626466	MBIP	Q9NS73	344 aa		13.79	□□□□□ -0.2
TCF4-253	ENST00000626466	PCDH10	Q9P2E7	1040 aa		13.79	□□□□□ -0.2
TCF4-253	ENST00000626466	MKRN3	Q13064	507 aa	Known RBP	13.78	□□□□□ -0.2
TCF4-253	ENST00000626466	NBPF9	Q3BBW0	867 aa		13.78	□□□□□ -0.2
TCF4-253	ENST00000626466	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.78	□□□□□ -0.2
TCF4-253	ENST00000626466	HYPK	Q9NX55	129 aa		13.78	□□□□□ -0.2
TCF4-253	ENST00000626466	ZNF646	O15015	1829 aa	Predicted RBP	13.78	□□□□□ -0.2
TCF4-253	ENST00000626466	PSME4	Q14997	1843 aa		13.78	□□□□□ -0.2
TCF4-253	ENST00000626466		G3V3G9	751 aa		13.77	□□□□□ -0.21
TCF4-253	ENST00000626466	DCAF8	Q5TAQ9	597 aa		13.77	□□□□□ -0.21
TCF4-253	ENST00000626466	RIC3	Q7Z5B4	369 aa		13.77	□□□□□ -0.21
TCF4-253	ENST00000626466	RUNDC1	Q96C34	613 aa		13.77	□□□□□ -0.21
TCF4-253	ENST00000626466	R3HDML	Q9H3Y0	253 aa		13.77	□□□□□ -0.21
TCF4-253	ENST00000626466	AKAP11	Q9UKA4	1901 aa		13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	XDH	P47989	1333 aa		13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	USP17L3	A6NCW0	530 aa		13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	USP17L4	A6NCW7	530 aa		13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	ELL2	O00472	640 aa	Predicted RBP	13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	USP17L8	P0C7I0	530 aa		13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	PRPF38B	Q5VTL8	546 aa	Known RBP	13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	USP17L1	Q7RTZ2	530 aa		13.76	□□□□□ -0.21
TCF4-253	ENST00000626466	PITPNM2	Q9BZ72	1349 aa		13.75	□□□□□ -0.21
TCF4-253	ENST00000626466	PDE8A	O60658	829 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms