RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 PDE4DIPQ5VU43 2346 aa19.19■□□□□ 0.66
PNKP-218ENST00000625299 TMPOP42166 694 aaKnown RBP19.18■□□□□ 0.66
PNKP-218ENST00000625299 SULF1Q8IWU6 871 aa19.18■□□□□ 0.66
PNKP-218ENST00000625299 RNF186Q9NXI6 227 aa19.18■□□□□ 0.66
PNKP-218ENST00000625299 GGA3Q9NZ52 723 aa19.18■□□□□ 0.66
PNKP-218ENST00000625299 G3V3G9 751 aa19.17■□□□□ 0.66
PNKP-218ENST00000625299 SF3B3Q15393 1217 aaKnown RBP19.17■□□□□ 0.66
PNKP-218ENST00000625299 DCAF8Q5TAQ9 597 aa19.17■□□□□ 0.66
PNKP-218ENST00000625299 HDGFL1Q5TGJ6 251 aa19.17■□□□□ 0.66
PNKP-218ENST00000625299 PLBD2Q8NHP8 589 aa19.17■□□□□ 0.66
PNKP-218ENST00000625299 ASTN2O75129 1339 aaPredicted RBP19.17■□□□□ 0.66
PNKP-218ENST00000625299 SCN9AQ15858 1988 aa19.17■□□□□ 0.66
PNKP-218ENST00000625299 ANKRD13DQ6ZTN6 518 aa19.16■□□□□ 0.66
PNKP-218ENST00000625299 TBC1D16Q8TBP0 767 aa19.16■□□□□ 0.66
PNKP-218ENST00000625299 SLC10A3P09131 477 aa19.15■□□□□ 0.66
PNKP-218ENST00000625299 CCDC146Q8IYE0 955 aa19.15■□□□□ 0.66
PNKP-218ENST00000625299 CDCA5Q96FF9 252 aa19.15■□□□□ 0.66
PNKP-218ENST00000625299 ISCA1Q9BUE6 129 aa19.15■□□□□ 0.66
PNKP-218ENST00000625299 ZC3H12CQ9C0D7 883 aaKnown RBP19.15■□□□□ 0.66
PNKP-218ENST00000625299 IRS4O14654 1257 aaPredicted RBP19.14■□□□□ 0.65
PNKP-218ENST00000625299 UFL1O94874 794 aa19.14■□□□□ 0.65
PNKP-218ENST00000625299 RPS8P62241 208 aaKnown RBP19.13■□□□□ 0.65
PNKP-218ENST00000625299 CSRNP1Q96S65 589 aa19.13■□□□□ 0.65
PNKP-218ENST00000625299 ANKIB1Q9P2G1 1089 aa19.13■□□□□ 0.65
PNKP-218ENST00000625299 CHL1O00533 1208 aa19.12■□□□□ 0.65
PNKP-218ENST00000625299 VIL1P09327 827 aaKnown RBP19.12■□□□□ 0.65
PNKP-218ENST00000625299 ANGEL2Q5VTE6 544 aaKnown RBP19.12■□□□□ 0.65
PNKP-218ENST00000625299 DBF4Q9UBU7 674 aaPredicted RBP19.12■□□□□ 0.65
PNKP-218ENST00000625299 SCARF1Q14162 830 aa19.11■□□□□ 0.65
PNKP-218ENST00000625299 CTU1Q7Z7A3 348 aaKnown RBP19.11■□□□□ 0.65
PNKP-218ENST00000625299 RASAL3Q86YV0 1011 aa19.11■□□□□ 0.65
PNKP-218ENST00000625299 SEC31BQ9NQW1 1179 aa19.11■□□□□ 0.65
PNKP-218ENST00000625299 PCDH10Q9P2E7 1040 aa19.11■□□□□ 0.65
PNKP-218ENST00000625299 GGA1Q9UJY5 639 aa19.1■□□□□ 0.65
PNKP-218ENST00000625299 RSBN1LQ6PCB5 846 aaPredicted RBP19.09■□□□□ 0.65
PNKP-218ENST00000625299 RIC3Q7Z5B4 369 aa19.09■□□□□ 0.65
PNKP-218ENST00000625299 CCDC85AQ96PX6 553 aaPredicted RBP19.09■□□□□ 0.65
PNKP-218ENST00000625299 HYPKQ9NX55 129 aa19.09■□□□□ 0.65
PNKP-218ENST00000625299 SCAF8Q9UPN6 1271 aaKnown RBP19.09■□□□□ 0.65
PNKP-218ENST00000625299 PAPPA2Q9BXP8 1791 aa19.09■□□□□ 0.65
PNKP-218ENST00000625299 HOXB7P09629 217 aa19.08■□□□□ 0.64
PNKP-218ENST00000625299 PODXL2Q9NZ53 605 aa19.08■□□□□ 0.64
PNKP-218ENST00000625299 PSME4Q14997 1843 aa19.07■□□□□ 0.64
PNKP-218ENST00000625299 ZNF280AP59817 542 aaPredicted RBP19.07■□□□□ 0.64
PNKP-218ENST00000625299 GOLGA2Q08379 1002 aa19.07■□□□□ 0.64
PNKP-218ENST00000625299 DUSP27Q5VZP5 1158 aa19.07■□□□□ 0.64
PNKP-218ENST00000625299 MOB2Q70IA6 237 aa19.07■□□□□ 0.64
PNKP-218ENST00000625299 ZBTB38Q8NAP3 1195 aaPredicted RBP19.07■□□□□ 0.64
PNKP-218ENST00000625299 AGBL3Q8NEM8 1001 aa19.07■□□□□ 0.64
PNKP-218ENST00000625299 MYOZ2Q9NPC6 264 aa19.07■□□□□ 0.64
PNKP-218ENST00000625299 TRIM35Q9UPQ4 493 aa19.07■□□□□ 0.64
PNKP-218ENST00000625299 CCDC152Q4G0S7 254 aa19.06■□□□□ 0.64
PNKP-218ENST00000625299 REM2Q8IYK8 340 aaPredicted RBP19.06■□□□□ 0.64
PNKP-218ENST00000625299 JARID2Q92833 1246 aaPredicted RBP19.06■□□□□ 0.64
PNKP-218ENST00000625299 MYD88Q99836 296 aa19.06■□□□□ 0.64
PNKP-218ENST00000625299 HDAC9Q9UKV0 1011 aa19.06■□□□□ 0.64
PNKP-218ENST00000625299 HPS5Q9UPZ3 1129 aa19.06■□□□□ 0.64
PNKP-218ENST00000625299 USP17L8P0C7I0 530 aa19.05■□□□□ 0.64
PNKP-218ENST00000625299 HSP90B1P14625 803 aaKnown RBP19.05■□□□□ 0.64
PNKP-218ENST00000625299 FKBP1BP68106 108 aa19.05■□□□□ 0.64
PNKP-218ENST00000625299 TRIM28Q13263 835 aaKnown RBP19.05■□□□□ 0.64
PNKP-218ENST00000625299 TTLL12Q14166 644 aaPredicted RBP19.05■□□□□ 0.64
PNKP-218ENST00000625299 RALBP1Q15311 655 aa19.05■□□□□ 0.64
PNKP-218ENST00000625299 UBE2Q2LH0YL09 131 aa19.04■□□□□ 0.64
PNKP-218ENST00000625299 TBC1D8O95759 1140 aa19.04■□□□□ 0.64
PNKP-218ENST00000625299 PRAMEF18Q5VWM3 479 aa19.04■□□□□ 0.64
PNKP-218ENST00000625299 RUNDC1Q96C34 613 aa19.04■□□□□ 0.64
PNKP-218ENST00000625299 XDHP47989 1333 aa19.03■□□□□ 0.64
PNKP-218ENST00000625299 ZNF609O15014 1411 aa19.03■□□□□ 0.64
PNKP-218ENST00000625299 MKRN3Q13064 507 aaKnown RBP19.03■□□□□ 0.64
PNKP-218ENST00000625299 WDR43Q15061 677 aaKnown RBP eCLIP19.03■□□□□ 0.64
PNKP-218ENST00000625299 PRPF38BQ5VTL8 546 aaKnown RBP19.03■□□□□ 0.64
PNKP-218ENST00000625299 ANKRD18AQ8IVF6 992 aa19.03■□□□□ 0.64
PNKP-218ENST00000625299 FBXW7Q969H0 707 aa19.03■□□□□ 0.64
PNKP-218ENST00000625299 PHAXQ9H814 394 aaKnown RBP19.03■□□□□ 0.64
PNKP-218ENST00000625299 PITPNM2Q9BZ72 1349 aa19.02■□□□□ 0.64
PNKP-218ENST00000625299 SPEF2Q9C093 1822 aa19.02■□□□□ 0.64
PNKP-218ENST00000625299 USP17L3A6NCW0 530 aa19.02■□□□□ 0.64
PNKP-218ENST00000625299 USP17L4A6NCW7 530 aa19.02■□□□□ 0.64
PNKP-218ENST00000625299 PDE8AO60658 829 aa19.02■□□□□ 0.64
PNKP-218ENST00000625299 USP17L1Q7RTZ2 530 aa19.02■□□□□ 0.64
PNKP-218ENST00000625299 ZNF296Q8WUU4 475 aaPredicted RBP19.02■□□□□ 0.64
PNKP-218ENST00000625299 MBIPQ9NS73 344 aa19.02■□□□□ 0.64
PNKP-218ENST00000625299 ELL2O00472 640 aaPredicted RBP19.01■□□□□ 0.63
PNKP-218ENST00000625299 ATP2B4P23634 1241 aa19.01■□□□□ 0.63
PNKP-218ENST00000625299 GMLQ99445 158 aa19.01■□□□□ 0.63
PNKP-218ENST00000625299 PCCAP05165 728 aaPredicted RBP19■□□□□ 0.63
PNKP-218ENST00000625299 NBPF9Q3BBW0 867 aa19■□□□□ 0.63
PNKP-218ENST00000625299 MXD3Q9BW11 206 aa19■□□□□ 0.63
PNKP-218ENST00000625299 CWC25Q9NXE8 425 aaPredicted RBP19■□□□□ 0.63
PNKP-218ENST00000625299 PKN2Q16513 984 aaKnown RBP18.99■□□□□ 0.63
PNKP-218ENST00000625299 PODNQ7Z5L7 613 aa18.99■□□□□ 0.63
PNKP-218ENST00000625299 CCDC191Q8NCU4 936 aa18.99■□□□□ 0.63
PNKP-218ENST00000625299 MYBBP1AQ9BQG0 1328 aaKnown RBP18.99■□□□□ 0.63
PNKP-218ENST00000625299 WTIPA6NIX2 430 aaPredicted RBP18.98■□□□□ 0.63
PNKP-218ENST00000625299 NF2P35240 595 aa18.98■□□□□ 0.63
PNKP-218ENST00000625299 PRKG1Q13976 671 aa18.97■□□□□ 0.63
PNKP-218ENST00000625299 OGFOD1Q8N543 542 aa18.97■□□□□ 0.63
PNKP-218ENST00000625299 CDC5LQ99459 802 aaKnown RBP18.97■□□□□ 0.63
PNKP-218ENST00000625299 ADAMTS8Q9UP79 889 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms