RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 PRRT3Q5FWE3 981 aa8.73□□□□□ -1.01
BRCA1-229ENST00000621897 PLD4Q96BZ4 506 aa8.73□□□□□ -1.01
BRCA1-229ENST00000621897 ABI2Q9NYB9 513 aaPredicted RBP8.73□□□□□ -1.01
BRCA1-229ENST00000621897 SERPINB4P48594 390 aa8.72□□□□□ -1.01
BRCA1-229ENST00000621897 TTC9Q92623 222 aa8.72□□□□□ -1.01
BRCA1-229ENST00000621897 ELP3Q9H9T3 547 aa8.72□□□□□ -1.01
BRCA1-229ENST00000621897 POLIQ9UNA4 740 aa8.72□□□□□ -1.01
BRCA1-229ENST00000621897 MTMR7Q9Y216 660 aa8.72□□□□□ -1.01
BRCA1-229ENST00000621897 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.72□□□□□ -1.01
BRCA1-229ENST00000621897 MZF1P28698 734 aaPredicted RBP8.71□□□□□ -1.02
BRCA1-229ENST00000621897 FKBP4Q02790 459 aaKnown RBP eCLIP8.71□□□□□ -1.02
BRCA1-229ENST00000621897 MSL1Q68DK7 614 aa8.71□□□□□ -1.02
BRCA1-229ENST00000621897 PDE12Q6L8Q7 609 aaKnown RBP8.71□□□□□ -1.02
BRCA1-229ENST00000621897 ZNF438Q7Z4V0 828 aa8.71□□□□□ -1.02
BRCA1-229ENST00000621897 CNTN3Q9P232 1028 aa8.71□□□□□ -1.02
BRCA1-229ENST00000621897 FZD6O60353 706 aa8.7□□□□□ -1.02
BRCA1-229ENST00000621897 GHRHP01286 108 aa8.7□□□□□ -1.02
BRCA1-229ENST00000621897 SF3B2Q13435 895 aaKnown RBP8.7□□□□□ -1.02
BRCA1-229ENST00000621897 C8orf34Q49A92 452 aa8.7□□□□□ -1.02
BRCA1-229ENST00000621897 TTC39BQ5VTQ0 682 aaPredicted RBP8.7□□□□□ -1.02
BRCA1-229ENST00000621897 FAM13AO94988 1023 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 BAG6P46379 1132 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 ATP11AP98196 1134 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 GDF6Q6KF10 455 aaPredicted RBP8.69□□□□□ -1.02
BRCA1-229ENST00000621897 B4GALNT3Q6L9W6 998 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 ALKBH2Q6NS38 261 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 CCDC87Q9NVE4 849 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 KANSL3Q9P2N6 904 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 TRIM33Q9UPN9 1127 aa8.69□□□□□ -1.02
BRCA1-229ENST00000621897 KIF4AO95239 1232 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 SELPP16109 830 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 HYAL2Q12891 473 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 AAMPQ13685 434 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 ECM1Q16610 540 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 SHISA2Q6UWI4 295 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 XKR5Q6UX68 686 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 WFDC8Q8IUA0 241 aa8.68□□□□□ -1.02
BRCA1-229ENST00000621897 FMR1NBQ8N0W7 255 aaPredicted RBP8.68□□□□□ -1.02
BRCA1-229ENST00000621897 ICMTO60725 284 aa8.67□□□□□ -1.02
BRCA1-229ENST00000621897 APBA3O96018 575 aa8.67□□□□□ -1.02
BRCA1-229ENST00000621897 PCSK2P16519 638 aa8.67□□□□□ -1.02
BRCA1-229ENST00000621897 RAC1P63000 192 aa8.67□□□□□ -1.02
BRCA1-229ENST00000621897 ADAMTSL4Q6UY14 1074 aa8.67□□□□□ -1.02
BRCA1-229ENST00000621897 C1orf127Q8N9H9 656 aa8.67□□□□□ -1.02
BRCA1-229ENST00000621897 EGFL7Q9UHF1 273 aa8.67□□□□□ -1.02
BRCA1-229ENST00000621897 H3BRB1 525 aa8.66□□□□□ -1.02
BRCA1-229ENST00000621897 RPLP1P05386 114 aaKnown RBP8.66□□□□□ -1.02
BRCA1-229ENST00000621897 ELNP15502 786 aa8.66□□□□□ -1.02
BRCA1-229ENST00000621897 TXNDC2Q86VQ3 553 aa8.66□□□□□ -1.02
BRCA1-229ENST00000621897 RBSNQ9H1K0 784 aa8.66□□□□□ -1.02
BRCA1-229ENST00000621897 RASSF4Q9H2L5 321 aa8.66□□□□□ -1.02
BRCA1-229ENST00000621897 CHRDQ9H2X0 955 aa8.66□□□□□ -1.02
BRCA1-229ENST00000621897 TUT1Q9H6E5 874 aaKnown RBP8.66□□□□□ -1.02
BRCA1-229ENST00000621897 DEAF1O75398 565 aaPredicted RBP8.65□□□□□ -1.02
BRCA1-229ENST00000621897 ACPPP15309 386 aa8.65□□□□□ -1.02
BRCA1-229ENST00000621897 IL22RA1Q8N6P7 574 aa8.65□□□□□ -1.02
BRCA1-229ENST00000621897 CEP120Q8N960 986 aa8.65□□□□□ -1.02
BRCA1-229ENST00000621897 GATA4P43694 442 aa8.64□□□□□ -1.03
BRCA1-229ENST00000621897 NACC1Q96RE7 527 aa8.64□□□□□ -1.03
BRCA1-229ENST00000621897 FOXD3Q9UJU5 478 aaPredicted RBP8.64□□□□□ -1.03
BRCA1-229ENST00000621897 FURINP09958 794 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 CES1P23141 567 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 ARHGAP4P98171 946 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 DOC2BQ14184 412 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 CEP135Q66GS9 1140 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 NCAPG2Q86XI2 1143 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 FBXO11Q86XK2 927 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 GLYCTKQ8IVS8 523 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 GJD3Q8N144 294 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 DTWD1Q8N5C7 304 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 TTC16Q8NEE8 873 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 SPACA7Q96KW9 195 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 SALL4Q9UJQ4 1053 aa8.63□□□□□ -1.03
BRCA1-229ENST00000621897 TNFRSF21O75509 655 aa8.62□□□□□ -1.03
BRCA1-229ENST00000621897 ADGRE1Q14246 886 aa8.62□□□□□ -1.03
BRCA1-229ENST00000621897 MBTPS1Q14703 1052 aa8.62□□□□□ -1.03
BRCA1-229ENST00000621897 SUZ12Q15022 739 aaKnown RBP8.62□□□□□ -1.03
BRCA1-229ENST00000621897 LACRTQ9GZZ8 138 aa8.62□□□□□ -1.03
BRCA1-229ENST00000621897 C9orf172C9J069 976 aa8.61□□□□□ -1.03
BRCA1-229ENST00000621897 EREGO14944 169 aa8.61□□□□□ -1.03
BRCA1-229ENST00000621897 TRPA1O75762 1119 aa8.61□□□□□ -1.03
BRCA1-229ENST00000621897 USP5P45974 858 aa8.61□□□□□ -1.03
BRCA1-229ENST00000621897 LENG1Q96BZ8 264 aaPredicted RBP8.61□□□□□ -1.03
BRCA1-229ENST00000621897 PBX4Q9BYU1 374 aa8.61□□□□□ -1.03
BRCA1-229ENST00000621897 ADAM23O75077 832 aa8.6□□□□□ -1.03
BRCA1-229ENST00000621897 SMNDC1O75940 238 aaKnown RBP eCLIP8.6□□□□□ -1.03
BRCA1-229ENST00000621897 PDE4CQ08493 712 aa8.6□□□□□ -1.03
BRCA1-229ENST00000621897 SETDB1Q15047 1291 aa8.6□□□□□ -1.03
BRCA1-229ENST00000621897 TXNDC11Q6PKC3 985 aa8.6□□□□□ -1.03
BRCA1-229ENST00000621897 HHIPQ96QV1 700 aa8.6□□□□□ -1.03
BRCA1-229ENST00000621897 POP1Q99575 1024 aaKnown RBP8.6□□□□□ -1.03
BRCA1-229ENST00000621897 NFKBIEO00221 500 aa8.59□□□□□ -1.03
BRCA1-229ENST00000621897 DLL1O00548 723 aa8.59□□□□□ -1.03
BRCA1-229ENST00000621897 PHACTR2O75167 634 aa8.59□□□□□ -1.03
BRCA1-229ENST00000621897 EHHADHQ08426 723 aa8.59□□□□□ -1.03
BRCA1-229ENST00000621897 SNX29Q8TEQ0 813 aa8.59□□□□□ -1.03
BRCA1-229ENST00000621897 TPSG1Q9NRR2 321 aa8.59□□□□□ -1.03
BRCA1-229ENST00000621897 DZANK1Q9NVP4 752 aa8.59□□□□□ -1.03
BRCA1-229ENST00000621897 LINC01387J3KSC0 135 aa8.58□□□□□ -1.04
BRCA1-229ENST00000621897 SH2B1Q9NRF2 756 aaPredicted RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms