RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SSH3Q8TE77 659 aa24.58■■□□□ 1.53
UPF3A-211ENST00000618700 BSDC1Q9NW68 430 aaPredicted RBP24.58■■□□□ 1.53
UPF3A-211ENST00000618700 PTPN12Q05209 780 aaKnown RBP24.57■■□□□ 1.52
UPF3A-211ENST00000618700 SIRT2Q8IXJ6 389 aa24.57■■□□□ 1.52
UPF3A-211ENST00000618700 RPAP2Q8IXW5 612 aaPredicted RBP24.57■■□□□ 1.52
UPF3A-211ENST00000618700 ZNF594Q96JF6 807 aaPredicted RBP24.57■■□□□ 1.52
UPF3A-211ENST00000618700 ATP6V0A2Q9Y487 856 aa24.57■■□□□ 1.52
UPF3A-211ENST00000618700 SPDYE2BA6NHP3 402 aa24.56■■□□□ 1.52
UPF3A-211ENST00000618700 SPDYE6P0CI01 402 aa24.56■■□□□ 1.52
UPF3A-211ENST00000618700 YBX3P16989 372 aaKnown RBP eCLIP24.56■■□□□ 1.52
UPF3A-211ENST00000618700 SPDYE2Q495Y8 402 aa24.56■■□□□ 1.52
UPF3A-211ENST00000618700 TAF7LQ5H9L4 462 aa24.56■■□□□ 1.52
UPF3A-211ENST00000618700 KLHDC4Q8TBB5 520 aa24.56■■□□□ 1.52
UPF3A-211ENST00000618700 LTBP1Q14766 1721 aa24.55■■□□□ 1.52
UPF3A-211ENST00000618700 C21orf2O43822 256 aa24.55■■□□□ 1.52
UPF3A-211ENST00000618700 OLFM4Q6UX06 510 aa24.55■■□□□ 1.52
UPF3A-211ENST00000618700 SP8Q8IXZ3 490 aa24.55■■□□□ 1.52
UPF3A-211ENST00000618700 COPRSQ9NQ92 184 aa24.55■■□□□ 1.52
UPF3A-211ENST00000618700 PCDHB15Q9Y5E8 787 aa24.55■■□□□ 1.52
UPF3A-211ENST00000618700 CHD4Q14839 1912 aa24.55■■□□□ 1.52
UPF3A-211ENST00000618700 GPR162Q16538 588 aa24.54■■□□□ 1.52
UPF3A-211ENST00000618700 CC2D2BQ6DHV5 1058 aa24.54■■□□□ 1.52
UPF3A-211ENST00000618700 MPHOSPH8Q99549 860 aa24.54■■□□□ 1.52
UPF3A-211ENST00000618700 A0A1B0GUL6 1792 aa24.54■■□□□ 1.52
UPF3A-211ENST00000618700 SOGA3Q5TF21 947 aa24.53■■□□□ 1.52
UPF3A-211ENST00000618700 LDHAL6AQ6ZMR3 332 aa24.53■■□□□ 1.52
UPF3A-211ENST00000618700 PELP1Q8IZL8 1130 aaKnown RBP24.53■■□□□ 1.52
UPF3A-211ENST00000618700 PUS3Q9BZE2 481 aaKnown RBP24.53■■□□□ 1.52
UPF3A-211ENST00000618700 PA2G4Q9UQ80 394 aaKnown RBP24.53■■□□□ 1.52
UPF3A-211ENST00000618700 CCDC93Q567U6 631 aa24.52■■□□□ 1.52
UPF3A-211ENST00000618700 FBXO3Q9UK99 471 aa24.52■■□□□ 1.52
UPF3A-211ENST00000618700 MINPP1Q9UNW1 487 aa24.52■■□□□ 1.52
UPF3A-211ENST00000618700 RIPOR2Q9Y4F9 1068 aa24.52■■□□□ 1.52
UPF3A-211ENST00000618700 FER1L6Q2WGJ9 1857 aa24.51■■□□□ 1.51
UPF3A-211ENST00000618700 DUOX1Q9NRD9 1551 aa24.51■■□□□ 1.51
UPF3A-211ENST00000618700 CIAO1O76071 339 aa24.51■■□□□ 1.51
UPF3A-211ENST00000618700 EYA2O00167 538 aa24.5■■□□□ 1.51
UPF3A-211ENST00000618700 HMMRO75330 724 aa24.5■■□□□ 1.51
UPF3A-211ENST00000618700 LRRC24Q50LG9 513 aa24.5■■□□□ 1.51
UPF3A-211ENST00000618700 ATG9AQ7Z3C6 839 aa24.5■■□□□ 1.51
UPF3A-211ENST00000618700 CNNM1Q9NRU3 951 aa24.5■■□□□ 1.51
UPF3A-211ENST00000618700 GRIPAP1Q4V328 841 aa24.49■■□□□ 1.51
UPF3A-211ENST00000618700 SIL1Q9H173 461 aa24.49■■□□□ 1.51
UPF3A-211ENST00000618700 PODXL2Q9NZ53 605 aa24.49■■□□□ 1.51
UPF3A-211ENST00000618700 NOP58Q9Y2X3 529 aaKnown RBP24.49■■□□□ 1.51
UPF3A-211ENST00000618700 GPSM2P81274 684 aa24.48■■□□□ 1.51
UPF3A-211ENST00000618700 CHRNDQ07001 517 aa24.48■■□□□ 1.51
UPF3A-211ENST00000618700 RTKN2Q8IZC4 609 aa24.48■■□□□ 1.51
UPF3A-211ENST00000618700 TMX4Q9H1E5 349 aaPredicted RBP24.48■■□□□ 1.51
UPF3A-211ENST00000618700 XDHP47989 1333 aa24.47■■□□□ 1.51
UPF3A-211ENST00000618700 LTBP3Q9NS15 1303 aa24.47■■□□□ 1.51
UPF3A-211ENST00000618700 NFKBIEO00221 500 aa24.47■■□□□ 1.51
UPF3A-211ENST00000618700 NEFLP07196 543 aa24.47■■□□□ 1.51
UPF3A-211ENST00000618700 MROH5Q6ZUA9 1318 aa24.46■■□□□ 1.51
UPF3A-211ENST00000618700 IL15P40933 162 aaPredicted RBP24.46■■□□□ 1.51
UPF3A-211ENST00000618700 MPNDQ8N594 471 aa24.46■■□□□ 1.51
UPF3A-211ENST00000618700 VGLL2Q8N8G2 317 aa24.46■■□□□ 1.51
UPF3A-211ENST00000618700 PSMD1Q99460 953 aa24.46■■□□□ 1.51
UPF3A-211ENST00000618700 RTFDC1Q9BY42 306 aaPredicted RBP24.46■■□□□ 1.51
UPF3A-211ENST00000618700 ANKRD2Q9GZV1 360 aa24.46■■□□□ 1.51
UPF3A-211ENST00000618700 GRIN3BO60391 1043 aa24.45■■□□□ 1.5
UPF3A-211ENST00000618700 FKBP4Q02790 459 aaKnown RBP eCLIP24.45■■□□□ 1.5
UPF3A-211ENST00000618700 HDAC1Q13547 482 aaPredicted RBP24.45■■□□□ 1.5
UPF3A-211ENST00000618700 DPP8Q6V1X1 898 aaPredicted RBP24.45■■□□□ 1.5
UPF3A-211ENST00000618700 UTRNP46939 3433 aa24.45■■□□□ 1.5
UPF3A-211ENST00000618700 SURF6O75683 361 aaKnown RBP24.44■■□□□ 1.5
UPF3A-211ENST00000618700 ANKIB1Q9P2G1 1089 aa24.44■■□□□ 1.5
UPF3A-211ENST00000618700 NSFL1CQ9UNZ2 370 aaKnown RBP24.44■■□□□ 1.5
UPF3A-211ENST00000618700 METTL24Q5JXM2 366 aa24.43■■□□□ 1.5
UPF3A-211ENST00000618700 HELBQ8NG08 1087 aaPredicted RBP24.43■■□□□ 1.5
UPF3A-211ENST00000618700 TAOK3Q9H2K8 898 aa24.43■■□□□ 1.5
UPF3A-211ENST00000618700 YY1P25490 414 aa24.42■■□□□ 1.5
UPF3A-211ENST00000618700 G3BP1Q13283 466 aaKnown RBP eCLIP24.42■■□□□ 1.5
UPF3A-211ENST00000618700 TBC1D16Q8TBP0 767 aa24.42■■□□□ 1.5
UPF3A-211ENST00000618700 POLLQ9UGP5 575 aa24.42■■□□□ 1.5
UPF3A-211ENST00000618700 GGA1Q9UJY5 639 aa24.42■■□□□ 1.5
UPF3A-211ENST00000618700 EXOC6BQ9Y2D4 811 aa24.42■■□□□ 1.5
UPF3A-211ENST00000618700 TAF5LO75529 589 aa24.41■■□□□ 1.5
UPF3A-211ENST00000618700 UFL1O94874 794 aa24.41■■□□□ 1.5
UPF3A-211ENST00000618700 ATP2B4P23634 1241 aa24.41■■□□□ 1.5
UPF3A-211ENST00000618700 RASSF7Q02833 373 aa24.41■■□□□ 1.5
UPF3A-211ENST00000618700 ARHGAP27Q6ZUM4 889 aa24.41■■□□□ 1.5
UPF3A-211ENST00000618700 LEMD3Q9Y2U8 911 aa24.41■■□□□ 1.5
UPF3A-211ENST00000618700 SASH1O94885 1247 aa24.4■■□□□ 1.5
UPF3A-211ENST00000618700 PDE8BO95263 885 aa24.4■■□□□ 1.5
UPF3A-211ENST00000618700 HSP90AB4PQ58FF6 505 aa24.4■■□□□ 1.5
UPF3A-211ENST00000618700 DCTPP1Q9H773 170 aa24.4■■□□□ 1.5
UPF3A-211ENST00000618700 WTIPA6NIX2 430 aaPredicted RBP24.39■■□□□ 1.49
UPF3A-211ENST00000618700 SNAP23O00161 211 aa24.39■■□□□ 1.49
UPF3A-211ENST00000618700 PRELPP51888 382 aa24.39■■□□□ 1.49
UPF3A-211ENST00000618700 SUPT20HQ8NEM7 779 aa24.39■■□□□ 1.49
UPF3A-211ENST00000618700 CEP126Q9P2H0 1117 aa24.39■■□□□ 1.49
UPF3A-211ENST00000618700 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.39■■□□□ 1.49
UPF3A-211ENST00000618700 ZNF804BA4D1E1 1349 aa24.38■■□□□ 1.49
UPF3A-211ENST00000618700 IRS2Q9Y4H2 1338 aa24.38■■□□□ 1.49
UPF3A-211ENST00000618700 FGFR2P21802 821 aa24.38■■□□□ 1.49
UPF3A-211ENST00000618700 TFCP2Q12800 502 aa24.38■■□□□ 1.49
UPF3A-211ENST00000618700 OS9Q13438 667 aaPredicted RBP24.38■■□□□ 1.49
UPF3A-211ENST00000618700 UBE4AQ14139 1066 aa24.38■■□□□ 1.49
UPF3A-211ENST00000618700 ERC1Q8IUD2 1116 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms