RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 MINPP1Q9UNW1 487 aa18.18■□□□□ 0.5
CD48-203ENST00000613788 ATP6V0A2Q9Y487 856 aa18.18■□□□□ 0.5
CD48-203ENST00000613788 MROH5Q6ZUA9 1318 aa18.18■□□□□ 0.5
CD48-203ENST00000613788 DALRD3Q5D0E6 543 aaKnown RBP18.18■□□□□ 0.5
CD48-203ENST00000613788 CENPQQ7L2Z9 268 aaPredicted RBP18.18■□□□□ 0.5
CD48-203ENST00000613788 SMC5Q8IY18 1101 aa18.18■□□□□ 0.5
CD48-203ENST00000613788 CEP126Q9P2H0 1117 aa18.18■□□□□ 0.5
CD48-203ENST00000613788 COL11A2P13942 1736 aaPredicted RBP18.17■□□□□ 0.5
CD48-203ENST00000613788 METTL24Q5JXM2 366 aa18.17■□□□□ 0.5
CD48-203ENST00000613788 CC2D2BQ6DHV5 1058 aa18.17■□□□□ 0.5
CD48-203ENST00000613788 KIF1BPQ96EK5 621 aa18.17■□□□□ 0.5
CD48-203ENST00000613788 ANKRD2Q9GZV1 360 aa18.17■□□□□ 0.5
CD48-203ENST00000613788 ZBTB47Q9UFB7 747 aaPredicted RBP18.17■□□□□ 0.5
CD48-203ENST00000613788 CHRNDQ07001 517 aa18.16■□□□□ 0.5
CD48-203ENST00000613788 LRRCC1Q9C099 1032 aa18.16■□□□□ 0.5
CD48-203ENST00000613788 APBB1O00213 710 aa18.15■□□□□ 0.5
CD48-203ENST00000613788 SASH1O94885 1247 aa18.15■□□□□ 0.5
CD48-203ENST00000613788 GRIPAP1Q4V328 841 aa18.15■□□□□ 0.5
CD48-203ENST00000613788 RHPN1Q8TCX5 695 aa18.15■□□□□ 0.5
CD48-203ENST00000613788 LRP5O75197 1615 aa18.14■□□□□ 0.5
CD48-203ENST00000613788 PDE8BO95263 885 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 TFCP2Q12800 502 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 SOGA3Q5TF21 947 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 C7orf43Q8WVR3 580 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 ANKIB1Q9P2G1 1089 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 AKAP2Q9Y2D5 859 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 KIAA1551Q9HCM1 1747 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 DLEC1Q9Y238 1755 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 TAF1P21675 1872 aa18.14■□□□□ 0.49
CD48-203ENST00000613788 ANKRD45Q5TZF3 282 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 NSFL1CQ9UNZ2 370 aaKnown RBP18.13■□□□□ 0.49
CD48-203ENST00000613788 BCS1LQ9Y276 419 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 KDM2BQ8NHM5 1336 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 COL4A1P02462 1669 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 C21orf2O43822 256 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 CLASRPQ8N2M8 674 aaKnown RBP18.13■□□□□ 0.49
CD48-203ENST00000613788 HELBQ8NG08 1087 aaPredicted RBP18.13■□□□□ 0.49
CD48-203ENST00000613788 GPR108Q9NPR9 543 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 PODXL2Q9NZ53 605 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 ZNF219Q9P2Y4 722 aaPredicted RBP18.13■□□□□ 0.49
CD48-203ENST00000613788 XDHP47989 1333 aa18.13■□□□□ 0.49
CD48-203ENST00000613788 TAF5LO75529 589 aa18.12■□□□□ 0.49
CD48-203ENST00000613788 MPNDQ8N594 471 aa18.12■□□□□ 0.49
CD48-203ENST00000613788 VGLL2Q8N8G2 317 aa18.12■□□□□ 0.49
CD48-203ENST00000613788 LEMD3Q9Y2U8 911 aa18.12■□□□□ 0.49
CD48-203ENST00000613788 ATP2B4P23634 1241 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 KCNJ4P48050 445 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 GPSM2P81274 684 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 NUCB1Q02818 461 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 PUM3Q15397 648 aaKnown RBP18.11■□□□□ 0.49
CD48-203ENST00000613788 CCDC93Q567U6 631 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 RTKN2Q8IZC4 609 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 WWC3Q9ULE0 1092 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 SLX4Q8IY92 1834 aa18.11■□□□□ 0.49
CD48-203ENST00000613788 UBE4AQ14139 1066 aa18.1■□□□□ 0.49
CD48-203ENST00000613788 DPP8Q6V1X1 898 aaPredicted RBP18.1■□□□□ 0.49
CD48-203ENST00000613788 IL1RAPL2Q9NP60 686 aa18.1■□□□□ 0.49
CD48-203ENST00000613788 GGA1Q9UJY5 639 aa18.1■□□□□ 0.49
CD48-203ENST00000613788 ATP2B3Q16720 1220 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 TNNI3KQ59H18 835 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 OLFM4Q6UX06 510 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 CHD1LQ86WJ1 897 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 LPIN2Q92539 896 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 FPGT-TNNI3KV9GXZ4 949 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 SPEF2Q9C093 1822 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 ZNF804BA4D1E1 1349 aa18.09■□□□□ 0.49
CD48-203ENST00000613788 SMARCA5O60264 1052 aaPredicted RBP18.08■□□□□ 0.49
CD48-203ENST00000613788 IFIT1P09914 478 aaKnown RBP18.08■□□□□ 0.49
CD48-203ENST00000613788 SLC5A1P13866 664 aa18.08■□□□□ 0.49
CD48-203ENST00000613788 NEUROD6Q96NK8 337 aa18.08■□□□□ 0.49
CD48-203ENST00000613788 BCL11AQ9H165 835 aa18.08■□□□□ 0.49
CD48-203ENST00000613788 A0A1B0GUL7 405 aa18.08■□□□□ 0.48
CD48-203ENST00000613788 C6orf229H3BNL8 230 aa18.08■□□□□ 0.48
CD48-203ENST00000613788 IFIT2P09913 472 aaKnown RBP18.08■□□□□ 0.48
CD48-203ENST00000613788 FGFR2P21802 821 aa18.08■□□□□ 0.48
CD48-203ENST00000613788 TIMM10P62072 90 aa18.08■□□□□ 0.48
CD48-203ENST00000613788 SUPT20HQ8NEM7 779 aa18.08■□□□□ 0.48
CD48-203ENST00000613788 TBC1D16Q8TBP0 767 aa18.08■□□□□ 0.48
CD48-203ENST00000613788 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.08■□□□□ 0.48
CD48-203ENST00000613788 UFL1O94874 794 aa18.07■□□□□ 0.48
CD48-203ENST00000613788 SLC51AQ86UW1 340 aa18.07■□□□□ 0.48
CD48-203ENST00000613788 AACSQ86V21 672 aa18.07■□□□□ 0.48
CD48-203ENST00000613788 EAF2Q96CJ1 260 aaPredicted RBP18.07■□□□□ 0.48
CD48-203ENST00000613788 LNPKQ9C0E8 428 aa18.07■□□□□ 0.48
CD48-203ENST00000613788 BRCA1P38398 1863 aaKnown RBP18.06■□□□□ 0.48
CD48-203ENST00000613788 SRCAPQ6ZRS2 3230 aa18.06■□□□□ 0.48
CD48-203ENST00000613788 SNAP23O00161 211 aa18.06■□□□□ 0.48
CD48-203ENST00000613788 PSMD1Q99460 953 aa18.06■□□□□ 0.48
CD48-203ENST00000613788 EYA3Q99504 573 aa18.06■□□□□ 0.48
CD48-203ENST00000613788 RTFDC1Q9BY42 306 aaPredicted RBP18.06■□□□□ 0.48
CD48-203ENST00000613788 POLLQ9UGP5 575 aa18.06■□□□□ 0.48
CD48-203ENST00000613788 LRRC37AA6NMS7 1700 aa18.06■□□□□ 0.48
CD48-203ENST00000613788 CACNA1SQ13698 1873 aa18.06■□□□□ 0.48
CD48-203ENST00000613788 GORABQ5T7V8 394 aa18.05■□□□□ 0.48
CD48-203ENST00000613788 PELP1Q8IZL8 1130 aaKnown RBP18.05■□□□□ 0.48
CD48-203ENST00000613788 CCDC8Q9H0W5 538 aaPredicted RBP18.05■□□□□ 0.48
CD48-203ENST00000613788 FKBP4Q02790 459 aaKnown RBP eCLIP18.04■□□□□ 0.48
CD48-203ENST00000613788 CAVIN4Q5BKX8 364 aa18.04■□□□□ 0.48
CD48-203ENST00000613788 C15orf52Q6ZUT6 534 aaKnown RBP18.04■□□□□ 0.48
CD48-203ENST00000613788 XAGE2Q96GT9 111 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms