RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 DLK2Q6UY11 383 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 TMC4Q7Z404 712 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 RIC3Q7Z5B4 369 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 ZC3H15Q8WU90 426 aaKnown RBP6.73□□□□□ -1.33
VRK3-226ENST00000602029 CNKSR2Q8WXI2 1034 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 FAM89AQ96GI7 184 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 CCDC85AQ96PX6 553 aaPredicted RBP6.73□□□□□ -1.33
VRK3-226ENST00000602029 ZC3H12CQ9C0D7 883 aaKnown RBP6.73□□□□□ -1.33
VRK3-226ENST00000602029 CHPF2Q9P2E5 772 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 HDAC9Q9UKV0 1011 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 HTTP42858 3142 aa6.72□□□□□ -1.33
VRK3-226ENST00000602029 PAPPA2Q9BXP8 1791 aa6.72□□□□□ -1.33
VRK3-226ENST00000602029 IRS4O14654 1257 aaPredicted RBP6.72□□□□□ -1.33
VRK3-226ENST00000602029 HSP90B1P14625 803 aaKnown RBP6.72□□□□□ -1.33
VRK3-226ENST00000602029 KIF23Q02241 960 aaPredicted RBP6.72□□□□□ -1.33
VRK3-226ENST00000602029 SLC10A5Q5PT55 438 aa6.72□□□□□ -1.33
VRK3-226ENST00000602029 CCDC102AQ96A19 550 aa6.72□□□□□ -1.33
VRK3-226ENST00000602029 RTFDC1Q9BY42 306 aaPredicted RBP6.72□□□□□ -1.33
VRK3-226ENST00000602029 GGA3Q9NZ52 723 aa6.72□□□□□ -1.33
VRK3-226ENST00000602029 YDJCA8MPS7 323 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 RPS12P25398 132 aaKnown RBP6.71□□□□□ -1.34
VRK3-226ENST00000602029 TMPOP42166 694 aaKnown RBP6.71□□□□□ -1.34
VRK3-226ENST00000602029 HIRAP54198 1017 aaPredicted RBP6.71□□□□□ -1.34
VRK3-226ENST00000602029 GPSM2P81274 684 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 MKRN3Q13064 507 aaKnown RBP6.71□□□□□ -1.34
VRK3-226ENST00000602029 KRT24Q2M2I5 525 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 ANKRD13DQ6ZTN6 518 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 PLBD2Q8NHP8 589 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 CELF1Q92879 486 aaKnown RBP6.71□□□□□ -1.34
VRK3-226ENST00000602029 GCC1Q96CN9 775 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 HHIPL1Q96JK4 782 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 PLEKHF1Q96S99 279 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 GGA1Q9UJY5 639 aa6.71□□□□□ -1.34
VRK3-226ENST00000602029 RBBP6Q7Z6E9 1792 aaKnown RBP6.7□□□□□ -1.34
VRK3-226ENST00000602029 SNED1Q8TER0 1413 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 ELL2O00472 640 aaPredicted RBP6.7□□□□□ -1.34
VRK3-226ENST00000602029 NF2P35240 595 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 RPS8P62241 208 aaKnown RBP6.7□□□□□ -1.34
VRK3-226ENST00000602029 PDIA6Q15084 440 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 CCDC152Q4G0S7 254 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 ANGEL2Q5VTE6 544 aaKnown RBP6.7□□□□□ -1.34
VRK3-226ENST00000602029 DPF2Q92785 391 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 JARID2Q92833 1246 aaPredicted RBP6.7□□□□□ -1.34
VRK3-226ENST00000602029 MYD88Q99836 296 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 KCNQ5Q9NR82 932 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 HYPKQ9NX55 129 aa6.7□□□□□ -1.34
VRK3-226ENST00000602029 DBF4Q9UBU7 674 aaPredicted RBP6.7□□□□□ -1.34
VRK3-226ENST00000602029 RANBP2P49792 3224 aaKnown RBP6.7□□□□□ -1.34
VRK3-226ENST00000602029 KDM3BQ7LBC6 1761 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 DDX58O95786 925 aaKnown RBP6.69□□□□□ -1.34
VRK3-226ENST00000602029 EGFRP00533 1210 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 HOXD11P31277 338 aaPredicted RBP6.69□□□□□ -1.34
VRK3-226ENST00000602029 KCNJ4P48050 445 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 PRKG1Q13976 671 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 SCARF1Q14162 830 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 RALBP1Q15311 655 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 DUSP27Q5VZP5 1158 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 ANKRD18AQ8IVF6 992 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 MIER1Q8N108 512 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 OGFOD1Q8N543 542 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 TBC1D16Q8TBP0 767 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 CDCA5Q96FF9 252 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 SEC31BQ9NQW1 1179 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 BABAM1Q9NWV8 329 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 RNF186Q9NXI6 227 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 POLLQ9UGP5 575 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 SCAF8Q9UPN6 1271 aaKnown RBP6.69□□□□□ -1.34
VRK3-226ENST00000602029 HPS5Q9UPZ3 1129 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 NUP98P52948 1817 aa6.69□□□□□ -1.34
VRK3-226ENST00000602029 UNC80Q8N2C7 3258 aa6.68□□□□□ -1.34
VRK3-226ENST00000602029 USP17L8P0C7I0 530 aa6.68□□□□□ -1.34
VRK3-226ENST00000602029 CTU1Q7Z7A3 348 aaKnown RBP6.68□□□□□ -1.34
VRK3-226ENST00000602029 RUNDC1Q96C34 613 aa6.68□□□□□ -1.34
VRK3-226ENST00000602029 PGAP2Q9UHJ9 254 aa6.68□□□□□ -1.34
VRK3-226ENST00000602029 ASTN2O75129 1339 aaPredicted RBP6.68□□□□□ -1.34
VRK3-226ENST00000602029 USP17L3A6NCW0 530 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 USP17L4A6NCW7 530 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 UBE2Q2LH0YL09 131 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 TBC1D8O95759 1140 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 SLC10A3P09131 477 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 CALD1Q05682 793 aaKnown RBP6.67□□□□□ -1.34
VRK3-226ENST00000602029 NEXNQ0ZGT2 675 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 DDX10Q13206 875 aaKnown RBP6.67□□□□□ -1.34
VRK3-226ENST00000602029 SF3B3Q15393 1217 aaKnown RBP6.67□□□□□ -1.34
VRK3-226ENST00000602029 PRAMEF18Q5VWM3 479 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 RSBN1LQ6PCB5 846 aaPredicted RBP6.67□□□□□ -1.34
VRK3-226ENST00000602029 USP17L1Q7RTZ2 530 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 ZBTB38Q8NAP3 1195 aaPredicted RBP6.67□□□□□ -1.34
VRK3-226ENST00000602029 CDC5LQ99459 802 aaKnown RBP6.67□□□□□ -1.34
VRK3-226ENST00000602029 MYOZ2Q9NPC6 264 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 CWC25Q9NXE8 425 aaPredicted RBP6.67□□□□□ -1.34
VRK3-226ENST00000602029 SAGE1Q9NXZ1 904 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 XDHP47989 1333 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 RTL9Q8NET4 1388 aa6.67□□□□□ -1.34
VRK3-226ENST00000602029 FAM155AB1AL88 458 aaPredicted RBP6.66□□□□□ -1.34
VRK3-226ENST00000602029 CCER2I3L3R5 266 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 CHL1O00533 1208 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 PDE8AO60658 829 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 SASH1O94885 1247 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 VIL1P09327 827 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms