RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 A0A1B0GUL6 1792 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 SCN4AP35499 1836 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 WASHC4Q2M389 1173 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 ATF7IPQ6VMQ6 1270 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 EYA3Q99504 573 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 MPHOSPH8Q99549 860 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 GGA1Q9UJY5 639 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 MINPP1Q9UNW1 487 aa21.21■□□□□ 0.99
TRIM28-215ENST00000601150 UFL1O94874 794 aa21.2■□□□□ 0.98
TRIM28-215ENST00000601150 VEGFAP15692 232 aaPredicted RBP21.2■□□□□ 0.98
TRIM28-215ENST00000601150 CCDC57Q2TAC2 916 aa21.2■□□□□ 0.98
TRIM28-215ENST00000601150 ZNRF3Q9ULT6 936 aa21.2■□□□□ 0.98
TRIM28-215ENST00000601150 TRIM27P14373 513 aa21.19■□□□□ 0.98
TRIM28-215ENST00000601150 INTS3Q68E01 1043 aaKnown RBP21.19■□□□□ 0.98
TRIM28-215ENST00000601150 C16orf71Q8IYS4 520 aaPredicted RBP21.19■□□□□ 0.98
TRIM28-215ENST00000601150 BICC1Q9H694 974 aaKnown RBP21.19■□□□□ 0.98
TRIM28-215ENST00000601150 RIMBP2O15034 1052 aa21.18■□□□□ 0.98
TRIM28-215ENST00000601150 ATP2B4P23634 1241 aa21.18■□□□□ 0.98
TRIM28-215ENST00000601150 C1QTNF8P60827 252 aa21.18■□□□□ 0.98
TRIM28-215ENST00000601150 RABL6Q3YEC7 729 aaPredicted RBP21.18■□□□□ 0.98
TRIM28-215ENST00000601150 TAF7LQ5H9L4 462 aa21.18■□□□□ 0.98
TRIM28-215ENST00000601150 ZKSCAN2Q63HK3 967 aa21.18■□□□□ 0.98
TRIM28-215ENST00000601150 GPC2Q8N158 579 aa21.18■□□□□ 0.98
TRIM28-215ENST00000601150 L3MBTL3Q96JM7 780 aaPredicted RBP21.18■□□□□ 0.98
TRIM28-215ENST00000601150 ZC3H12CQ9C0D7 883 aaKnown RBP21.18■□□□□ 0.98
TRIM28-215ENST00000601150 ANKRD2Q9GZV1 360 aa21.18■□□□□ 0.98
TRIM28-215ENST00000601150 UBTFL1P0CB47 393 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-215ENST00000601150 ANKRD44Q8N8A2 993 aa21.17■□□□□ 0.98
TRIM28-215ENST00000601150 GPR101Q96P66 508 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-215ENST00000601150 POTECB2RU33 542 aa21.16■□□□□ 0.98
TRIM28-215ENST00000601150 TOMM70O94826 608 aa21.16■□□□□ 0.98
TRIM28-215ENST00000601150 HDAC5Q9UQL6 1122 aa21.16■□□□□ 0.98
TRIM28-215ENST00000601150 TNNQ9UQP3 1299 aa21.16■□□□□ 0.98
TRIM28-215ENST00000601150 GJA3Q9Y6H8 435 aa21.16■□□□□ 0.98
TRIM28-215ENST00000601150 IQCA1LA6NCM1 817 aa21.15■□□□□ 0.98
TRIM28-215ENST00000601150 CLUAP1Q96AJ1 413 aa21.15■□□□□ 0.98
TRIM28-215ENST00000601150 ZNF594Q96JF6 807 aaPredicted RBP21.15■□□□□ 0.98
TRIM28-215ENST00000601150 LEMD3Q9Y2U8 911 aa21.15■□□□□ 0.98
TRIM28-215ENST00000601150 CXCL9Q07325 125 aa21.14■□□□□ 0.97
TRIM28-215ENST00000601150 LDHAL6AQ6ZMR3 332 aa21.14■□□□□ 0.97
TRIM28-215ENST00000601150 DBNDD1Q9H9R9 158 aa21.14■□□□□ 0.97
TRIM28-215ENST00000601150 G3V3G9 751 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 ECE2O60344 883 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 CHRNDQ07001 517 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 DOK7Q18PE1 504 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 DCAF8Q5TAQ9 597 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 CIAPIN1Q6FI81 312 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 RBM46Q8TBY0 533 aaKnown RBP21.13■□□□□ 0.97
TRIM28-215ENST00000601150 MEIS3Q99687 375 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 CNNM1Q9NRU3 951 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 PSME4Q14997 1843 aa21.13■□□□□ 0.97
TRIM28-215ENST00000601150 MED23Q9ULK4 1368 aa21.12■□□□□ 0.97
TRIM28-215ENST00000601150 YDJCA8MPS7 323 aa21.12■□□□□ 0.97
TRIM28-215ENST00000601150 GNAI3P08754 354 aa21.12■□□□□ 0.97
TRIM28-215ENST00000601150 TNIP1Q15025 636 aa21.12■□□□□ 0.97
TRIM28-215ENST00000601150 HACL1Q9UJ83 578 aa21.12■□□□□ 0.97
TRIM28-215ENST00000601150 SCN9AQ15858 1988 aa21.12■□□□□ 0.97
TRIM28-215ENST00000601150 ZNF804BA4D1E1 1349 aa21.11■□□□□ 0.97
TRIM28-215ENST00000601150 WTIPA6NIX2 430 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-215ENST00000601150 RAD17O75943 681 aa21.11■□□□□ 0.97
TRIM28-215ENST00000601150 KCNJ4P48050 445 aa21.11■□□□□ 0.97
TRIM28-215ENST00000601150 LRRFIP2Q9Y608 721 aaKnown RBP21.11■□□□□ 0.97
TRIM28-215ENST00000601150 LMOD1P29536 600 aaPredicted RBP21.1■□□□□ 0.97
TRIM28-215ENST00000601150 FTSJ3Q8IY81 847 aaKnown RBP21.1■□□□□ 0.97
TRIM28-215ENST00000601150 DZIP1LQ8IYY4 767 aaKnown RBP21.1■□□□□ 0.97
TRIM28-215ENST00000601150 TMEM57Q8N5G2 664 aa21.1■□□□□ 0.97
TRIM28-215ENST00000601150 TAF1DQ9H5J8 278 aaPredicted RBP21.1■□□□□ 0.97
TRIM28-215ENST00000601150 TAF5LO75529 589 aa21.09■□□□□ 0.97
TRIM28-215ENST00000601150 HELBQ8NG08 1087 aaPredicted RBP21.09■□□□□ 0.97
TRIM28-215ENST00000601150 RCAN3Q9UKA8 241 aa21.09■□□□□ 0.97
TRIM28-215ENST00000601150 EPHX2P34913 555 aa21.08■□□□□ 0.97
TRIM28-215ENST00000601150 SCNN1DP51172 638 aa21.08■□□□□ 0.97
TRIM28-215ENST00000601150 FSTL1Q12841 308 aa21.08■□□□□ 0.97
TRIM28-215ENST00000601150 PUS3Q9BZE2 481 aaKnown RBP21.08■□□□□ 0.97
TRIM28-215ENST00000601150 PLIN1O60240 522 aa21.07■□□□□ 0.96
TRIM28-215ENST00000601150 GMPSP49915 693 aaPredicted RBP21.07■□□□□ 0.96
TRIM28-215ENST00000601150 SMC1BQ8NDV3 1235 aa21.07■□□□□ 0.96
TRIM28-215ENST00000601150 RIPOR2Q9Y4F9 1068 aa21.07■□□□□ 0.96
TRIM28-215ENST00000601150 MROH5Q6ZUA9 1318 aa21.06■□□□□ 0.96
TRIM28-215ENST00000601150 PSMD14O00487 310 aa21.06■□□□□ 0.96
TRIM28-215ENST00000601150 RFX5P48382 616 aaPredicted RBP21.06■□□□□ 0.96
TRIM28-215ENST00000601150 PODNQ7Z5L7 613 aa21.06■□□□□ 0.96
TRIM28-215ENST00000601150 KLHDC4Q8TBB5 520 aa21.06■□□□□ 0.96
TRIM28-215ENST00000601150 YTHDC1Q96MU7 727 aaKnown RBP21.06■□□□□ 0.96
TRIM28-215ENST00000601150 KCNQ5Q9NR82 932 aa21.06■□□□□ 0.96
TRIM28-215ENST00000601150 GPRC5DQ9NZD1 345 aa21.06■□□□□ 0.96
TRIM28-215ENST00000601150 ADAMTSL1Q8N6G6 1762 aa21.05■□□□□ 0.96
TRIM28-215ENST00000601150 MS4A1P11836 297 aa21.05■□□□□ 0.96
TRIM28-215ENST00000601150 RLBP1P12271 317 aa21.05■□□□□ 0.96
TRIM28-215ENST00000601150 KLRK1P26718 216 aa21.05■□□□□ 0.96
TRIM28-215ENST00000601150 LRRC24Q50LG9 513 aa21.05■□□□□ 0.96
TRIM28-215ENST00000601150 C15orf52Q6ZUT6 534 aaKnown RBP21.05■□□□□ 0.96
TRIM28-215ENST00000601150 PNMA8AQ86V59 439 aaPredicted RBP21.05■□□□□ 0.96
TRIM28-215ENST00000601150 TXNRD3Q86VQ6 643 aa21.05■□□□□ 0.96
TRIM28-215ENST00000601150 COA1Q9GZY4 146 aa21.05■□□□□ 0.96
TRIM28-215ENST00000601150 ZNF646O15015 1829 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-215ENST00000601150 SNAP23O00161 211 aa21.04■□□□□ 0.96
TRIM28-215ENST00000601150 GNAI2P04899 355 aa21.04■□□□□ 0.96
TRIM28-215ENST00000601150 EPS15P42566 896 aa21.04■□□□□ 0.96
TRIM28-215ENST00000601150 EAPPQ56P03 285 aaPredicted RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms