RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 RTL5Q5HYW3 569 aaPredicted RBP13.09□□□□□ -0.31
HIF3A-219ENST00000600879 PLEKHF1Q96S99 279 aa13.09□□□□□ -0.31
HIF3A-219ENST00000600879 R3HDMLQ9H3Y0 253 aa13.09□□□□□ -0.31
HIF3A-219ENST00000600879 ANKRD36CQ5JPF3 1778 aa13.09□□□□□ -0.31
HIF3A-219ENST00000600879 POLR2AP24928 1970 aaKnown RBP13.09□□□□□ -0.31
HIF3A-219ENST00000600879 TCIRG1Q13488 830 aa13.08□□□□□ -0.32
HIF3A-219ENST00000600879 SCARF1Q14162 830 aa13.08□□□□□ -0.32
HIF3A-219ENST00000600879 HSP90AB3PQ58FF7 597 aa13.08□□□□□ -0.32
HIF3A-219ENST00000600879 HABP4Q5JVS0 413 aaKnown RBP13.08□□□□□ -0.32
HIF3A-219ENST00000600879 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.08□□□□□ -0.32
HIF3A-219ENST00000600879 MAPK8IP3Q9UPT6 1336 aa13.08□□□□□ -0.32
HIF3A-219ENST00000600879 FAM89AQ96GI7 184 aa13.07□□□□□ -0.32
HIF3A-219ENST00000600879 AKAP11Q9UKA4 1901 aa13.07□□□□□ -0.32
HIF3A-219ENST00000600879 LRRC37AA6NMS7 1700 aa13.07□□□□□ -0.32
HIF3A-219ENST00000600879 POTEFA5A3E0 1075 aa13.06□□□□□ -0.32
HIF3A-219ENST00000600879 RPS12P25398 132 aaKnown RBP13.06□□□□□ -0.32
HIF3A-219ENST00000600879 KRT24Q2M2I5 525 aa13.06□□□□□ -0.32
HIF3A-219ENST00000600879 TMC4Q7Z404 712 aa13.06□□□□□ -0.32
HIF3A-219ENST00000600879 ATP5J2-PTCD1G3V325 749 aa13.05□□□□□ -0.32
HIF3A-219ENST00000600879 GPR25O00155 361 aa13.05□□□□□ -0.32
HIF3A-219ENST00000600879 TTLL12Q14166 644 aaPredicted RBP13.05□□□□□ -0.32
HIF3A-219ENST00000600879 TBC1D16Q8TBP0 767 aa13.05□□□□□ -0.32
HIF3A-219ENST00000600879 EYA3Q99504 573 aa13.05□□□□□ -0.32
HIF3A-219ENST00000600879 DDX60Q8IY21 1712 aaKnown RBP13.05□□□□□ -0.32
HIF3A-219ENST00000600879 G3V3G9 751 aa13.04□□□□□ -0.32
HIF3A-219ENST00000600879 VIL1P09327 827 aaKnown RBP13.04□□□□□ -0.32
HIF3A-219ENST00000600879 PRKG1Q13976 671 aa13.04□□□□□ -0.32
HIF3A-219ENST00000600879 PKN2Q16513 984 aaKnown RBP13.04□□□□□ -0.32
HIF3A-219ENST00000600879 DCAF8Q5TAQ9 597 aa13.04□□□□□ -0.32
HIF3A-219ENST00000600879 FBXO46Q6PJ61 603 aaPredicted RBP13.04□□□□□ -0.32
HIF3A-219ENST00000600879 SCN9AQ15858 1988 aa13.03□□□□□ -0.32
HIF3A-219ENST00000600879 MKI67P46013 3256 aaKnown RBP13.03□□□□□ -0.32
HIF3A-219ENST00000600879 WTIPA6NIX2 430 aaPredicted RBP13.03□□□□□ -0.32
HIF3A-219ENST00000600879 UFL1O94874 794 aa13.03□□□□□ -0.32
HIF3A-219ENST00000600879 RIPK4P57078 832 aa13.03□□□□□ -0.32
HIF3A-219ENST00000600879 MXD3Q9BW11 206 aa13.03□□□□□ -0.32
HIF3A-219ENST00000600879 ZC3H12CQ9C0D7 883 aaKnown RBP13.03□□□□□ -0.32
HIF3A-219ENST00000600879 CHPF2Q9P2E5 772 aa13.03□□□□□ -0.32
HIF3A-219ENST00000600879 FZD1Q9UP38 647 aa13.03□□□□□ -0.32
HIF3A-219ENST00000600879 ZNF280AP59817 542 aaPredicted RBP13.02□□□□□ -0.33
HIF3A-219ENST00000600879 SF3B3Q15393 1217 aaKnown RBP13.02□□□□□ -0.33
HIF3A-219ENST00000600879 GCC1Q96CN9 775 aa13.02□□□□□ -0.33
HIF3A-219ENST00000600879 CCDC85AQ96PX6 553 aaPredicted RBP13.02□□□□□ -0.33
HIF3A-219ENST00000600879 MYOZ2Q9NPC6 264 aa13.02□□□□□ -0.33
HIF3A-219ENST00000600879 SEC31BQ9NQW1 1179 aa13.02□□□□□ -0.33
HIF3A-219ENST00000600879 LAS1LQ9Y4W2 734 aaKnown RBP13.02□□□□□ -0.33
HIF3A-219ENST00000600879 PAPPA2Q9BXP8 1791 aa13.02□□□□□ -0.33
HIF3A-219ENST00000600879 IRS4O14654 1257 aaPredicted RBP13.01□□□□□ -0.33
HIF3A-219ENST00000600879 FXR1P51114 621 aaKnown RBP eCLIP13.01□□□□□ -0.33
HIF3A-219ENST00000600879 RPS8P62241 208 aaKnown RBP13.01□□□□□ -0.33
HIF3A-219ENST00000600879 NBPF9Q3BBW0 867 aa13.01□□□□□ -0.33
HIF3A-219ENST00000600879 RSBN1LQ6PCB5 846 aaPredicted RBP13.01□□□□□ -0.33
HIF3A-219ENST00000600879 REM2Q8IYK8 340 aaPredicted RBP13.01□□□□□ -0.33
HIF3A-219ENST00000600879 JARID2Q92833 1246 aaPredicted RBP13.01□□□□□ -0.33
HIF3A-219ENST00000600879 ANKIB1Q9P2G1 1089 aa13.01□□□□□ -0.33
HIF3A-219ENST00000600879 FKTNO75072 461 aa13□□□□□ -0.33
HIF3A-219ENST00000600879 NEUROD2Q15784 382 aa13□□□□□ -0.33
HIF3A-219ENST00000600879 ANKRD13DQ6ZTN6 518 aa13□□□□□ -0.33
HIF3A-219ENST00000600879 PLBD2Q8NHP8 589 aa13□□□□□ -0.33
HIF3A-219ENST00000600879 ISCA1Q9BUE6 129 aa13□□□□□ -0.33
HIF3A-219ENST00000600879 TRIM17Q9Y577 477 aa13□□□□□ -0.33
HIF3A-219ENST00000600879 SASH1O94885 1247 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 USP17L8P0C7I0 530 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 EN2P19622 333 aaPredicted RBP12.99□□□□□ -0.33
HIF3A-219ENST00000600879 TM4SF4P48230 202 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 FKBP1BP68106 108 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 PTPN12Q05209 780 aaKnown RBP12.99□□□□□ -0.33
HIF3A-219ENST00000600879 HDGFL1Q5TGJ6 251 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 FBXW7Q969H0 707 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 PNNQ9H307 717 aaKnown RBP12.99□□□□□ -0.33
HIF3A-219ENST00000600879 GGA1Q9UJY5 639 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 HTTP42858 3142 aa12.99□□□□□ -0.33
HIF3A-219ENST00000600879 AGBL3Q8NEM8 1001 aa12.98□□□□□ -0.33
HIF3A-219ENST00000600879 GMLQ99445 158 aa12.98□□□□□ -0.33
HIF3A-219ENST00000600879 TMPOP42166 694 aaKnown RBP12.97□□□□□ -0.33
HIF3A-219ENST00000600879 OTOP1Q7RTM1 612 aa12.97□□□□□ -0.33
HIF3A-219ENST00000600879 CCDC146Q8IYE0 955 aa12.97□□□□□ -0.33
HIF3A-219ENST00000600879 BABAM1Q9NWV8 329 aa12.97□□□□□ -0.33
HIF3A-219ENST00000600879 PODXL2Q9NZ53 605 aa12.97□□□□□ -0.33
HIF3A-219ENST00000600879 COLQQ9Y215 455 aaPredicted RBP12.97□□□□□ -0.33
HIF3A-219ENST00000600879 MYCP01106 439 aaPredicted RBP12.96□□□□□ -0.33
HIF3A-219ENST00000600879 CAP1Q01518 475 aa12.96□□□□□ -0.33
HIF3A-219ENST00000600879 PITPNM2Q9BZ72 1349 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 USP17L3A6NCW0 530 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 USP17L4A6NCW7 530 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 LMOD3Q0VAK6 560 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 SREBF2Q12772 1141 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 USP17L1Q7RTZ2 530 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 CD99L2Q8TCZ2 262 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 CLMNQ96JQ2 1002 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 CENPFP49454 3210 aa12.95□□□□□ -0.34
HIF3A-219ENST00000600879 IGF2BP3O00425 579 aaKnown RBP eCLIP12.94□□□□□ -0.34
HIF3A-219ENST00000600879 CHL1O00533 1208 aa12.94□□□□□ -0.34
HIF3A-219ENST00000600879 WNT10BO00744 389 aa12.94□□□□□ -0.34
HIF3A-219ENST00000600879 SPRYD7Q5W111 196 aa12.94□□□□□ -0.34
HIF3A-219ENST00000600879 RIC3Q7Z5B4 369 aa12.94□□□□□ -0.34
HIF3A-219ENST00000600879 MYD88Q99836 296 aa12.94□□□□□ -0.34
HIF3A-219ENST00000600879 DBF4Q9UBU7 674 aaPredicted RBP12.94□□□□□ -0.34
HIF3A-219ENST00000600879 ANGEL1Q9UNK9 670 aaKnown RBP12.94□□□□□ -0.34
HIF3A-219ENST00000600879 ZNF609O15014 1411 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms