RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FHDC1Q9C0D6 1143 aaPredicted RBP17.77■□□□□ 0.44
UPF1-211ENST00000600868 SPEF2Q9C093 1822 aa17.77■□□□□ 0.43
UPF1-211ENST00000600868 PPEF1O14829 653 aaPredicted RBP17.76■□□□□ 0.43
UPF1-211ENST00000600868 OS9Q13438 667 aaPredicted RBP17.76■□□□□ 0.43
UPF1-211ENST00000600868 PIM2Q9P1W9 311 aa17.76■□□□□ 0.43
UPF1-211ENST00000600868 MROH5Q6ZUA9 1318 aa17.75■□□□□ 0.43
UPF1-211ENST00000600868 PRPF40BQ6NWY9 871 aaKnown RBP17.75■□□□□ 0.43
UPF1-211ENST00000600868 SP8Q8IXZ3 490 aa17.75■□□□□ 0.43
UPF1-211ENST00000600868 KIF1BPQ96EK5 621 aa17.75■□□□□ 0.43
UPF1-211ENST00000600868 MINPP1Q9UNW1 487 aa17.75■□□□□ 0.43
UPF1-211ENST00000600868 ATP6V0A2Q9Y487 856 aa17.75■□□□□ 0.43
UPF1-211ENST00000600868 BRCA1P38398 1863 aaKnown RBP17.74■□□□□ 0.43
UPF1-211ENST00000600868 SASH1O94885 1247 aa17.74■□□□□ 0.43
UPF1-211ENST00000600868 NLGN2Q8NFZ4 835 aa17.74■□□□□ 0.43
UPF1-211ENST00000600868 SYT17Q9BSW7 474 aa17.74■□□□□ 0.43
UPF1-211ENST00000600868 SLX4Q8IY92 1834 aa17.74■□□□□ 0.43
UPF1-211ENST00000600868 CHRNDQ07001 517 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 METTL24Q5JXM2 366 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 VGLL2Q8N8G2 317 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 RHPN1Q8TCX5 695 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 C7orf43Q8WVR3 580 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 LRRCC1Q9C099 1032 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 ANKRD2Q9GZV1 360 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 CEP126Q9P2H0 1117 aa17.73■□□□□ 0.43
UPF1-211ENST00000600868 LRRC37AA6NMS7 1700 aa17.72■□□□□ 0.43
UPF1-211ENST00000600868 CACNA1SQ13698 1873 aa17.72■□□□□ 0.43
UPF1-211ENST00000600868 DALRD3Q5D0E6 543 aaKnown RBP17.72■□□□□ 0.43
UPF1-211ENST00000600868 CC2D2BQ6DHV5 1058 aa17.72■□□□□ 0.43
UPF1-211ENST00000600868 APBB1O00213 710 aa17.71■□□□□ 0.43
UPF1-211ENST00000600868 PDE8BO95263 885 aa17.71■□□□□ 0.43
UPF1-211ENST00000600868 NUCB1Q02818 461 aa17.71■□□□□ 0.43
UPF1-211ENST00000600868 TFCP2Q12800 502 aa17.71■□□□□ 0.43
UPF1-211ENST00000600868 ANKRD45Q5TZF3 282 aa17.71■□□□□ 0.43
UPF1-211ENST00000600868 TMX4Q9H1E5 349 aaPredicted RBP17.71■□□□□ 0.43
UPF1-211ENST00000600868 GPR108Q9NPR9 543 aa17.71■□□□□ 0.43
UPF1-211ENST00000600868 GRIPAP1Q4V328 841 aa17.7■□□□□ 0.42
UPF1-211ENST00000600868 PODXL2Q9NZ53 605 aa17.7■□□□□ 0.42
UPF1-211ENST00000600868 AKAP2Q9Y2D5 859 aa17.7■□□□□ 0.42
UPF1-211ENST00000600868 A0A1B0GUL6 1792 aa17.7■□□□□ 0.42
UPF1-211ENST00000600868 XDHP47989 1333 aa17.7■□□□□ 0.42
UPF1-211ENST00000600868 TAF5LO75529 589 aa17.69■□□□□ 0.42
UPF1-211ENST00000600868 HELBQ8NG08 1087 aaPredicted RBP17.69■□□□□ 0.42
UPF1-211ENST00000600868 ZBTB47Q9UFB7 747 aaPredicted RBP17.69■□□□□ 0.42
UPF1-211ENST00000600868 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.69■□□□□ 0.42
UPF1-211ENST00000600868 SMARCA5O60264 1052 aaPredicted RBP17.68■□□□□ 0.42
UPF1-211ENST00000600868 GPSM2P81274 684 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 UBE4AQ14139 1066 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 PUM3Q15397 648 aaKnown RBP17.68■□□□□ 0.42
UPF1-211ENST00000600868 SOGA3Q5TF21 947 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 SLC51AQ86UW1 340 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 CHD1LQ86WJ1 897 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 CLASRPQ8N2M8 674 aaKnown RBP17.68■□□□□ 0.42
UPF1-211ENST00000600868 IL1RAPL2Q9NP60 686 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 ANKIB1Q9P2G1 1089 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 NSFL1CQ9UNZ2 370 aaKnown RBP17.68■□□□□ 0.42
UPF1-211ENST00000600868 LEMD3Q9Y2U8 911 aa17.68■□□□□ 0.42
UPF1-211ENST00000600868 LTBP1Q14766 1721 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 C21orf2O43822 256 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 FGFR2P21802 821 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 ATP2B4P23634 1241 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 TNNI3KQ59H18 835 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 OLFM4Q6UX06 510 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 MPNDQ8N594 471 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 FPGT-TNNI3KV9GXZ4 949 aa17.67■□□□□ 0.42
UPF1-211ENST00000600868 ZNF609O15014 1411 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 SNED1Q8TER0 1413 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 ATP2B3Q16720 1220 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 CCDC93Q567U6 631 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 RTKN2Q8IZC4 609 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 LPIN2Q92539 896 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 EAF2Q96CJ1 260 aaPredicted RBP17.66■□□□□ 0.42
UPF1-211ENST00000600868 ZNF219Q9P2Y4 722 aaPredicted RBP17.66■□□□□ 0.42
UPF1-211ENST00000600868 GGA1Q9UJY5 639 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 BCS1LQ9Y276 419 aa17.66■□□□□ 0.42
UPF1-211ENST00000600868 ARFGEF1Q9Y6D6 1849 aa17.65■□□□□ 0.42
UPF1-211ENST00000600868 A0A1B0GUL7 405 aa17.65■□□□□ 0.42
UPF1-211ENST00000600868 KCNJ4P48050 445 aa17.65■□□□□ 0.42
UPF1-211ENST00000600868 DPP8Q6V1X1 898 aaPredicted RBP17.65■□□□□ 0.42
UPF1-211ENST00000600868 AACSQ86V21 672 aa17.65■□□□□ 0.42
UPF1-211ENST00000600868 RTFDC1Q9BY42 306 aaPredicted RBP17.65■□□□□ 0.42
UPF1-211ENST00000600868 LNPKQ9C0E8 428 aa17.65■□□□□ 0.42
UPF1-211ENST00000600868 ZNF804BA4D1E1 1349 aa17.65■□□□□ 0.42
UPF1-211ENST00000600868 SNAP23O00161 211 aa17.64■□□□□ 0.41
UPF1-211ENST00000600868 UFL1O94874 794 aa17.64■□□□□ 0.41
UPF1-211ENST00000600868 IFIT1P09914 478 aaKnown RBP17.64■□□□□ 0.41
UPF1-211ENST00000600868 SLC5A1P13866 664 aa17.64■□□□□ 0.41
UPF1-211ENST00000600868 TIMM10P62072 90 aa17.64■□□□□ 0.41
UPF1-211ENST00000600868 C15orf52Q6ZUT6 534 aaKnown RBP17.64■□□□□ 0.41
UPF1-211ENST00000600868 TBC1D16Q8TBP0 767 aa17.64■□□□□ 0.41
UPF1-211ENST00000600868 POLLQ9UGP5 575 aa17.64■□□□□ 0.41
UPF1-211ENST00000600868 WWC3Q9ULE0 1092 aa17.64■□□□□ 0.41
UPF1-211ENST00000600868 IFIT2P09913 472 aaKnown RBP17.63■□□□□ 0.41
UPF1-211ENST00000600868 NEUROD6Q96NK8 337 aa17.63■□□□□ 0.41
UPF1-211ENST00000600868 DUOX1Q9NRD9 1551 aa17.62■□□□□ 0.41
UPF1-211ENST00000600868 ARAP2Q8WZ64 1704 aa17.62■□□□□ 0.41
UPF1-211ENST00000600868 WTIPA6NIX2 430 aaPredicted RBP17.62■□□□□ 0.41
UPF1-211ENST00000600868 C6orf229H3BNL8 230 aa17.62■□□□□ 0.41
UPF1-211ENST00000600868 C16orf71Q8IYS4 520 aaPredicted RBP17.62■□□□□ 0.41
UPF1-211ENST00000600868 SUPT20HQ8NEM7 779 aa17.62■□□□□ 0.41
UPF1-211ENST00000600868 XAGE2Q96GT9 111 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms