RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CCDC152Q4G0S7 254 aa22.63■■□□□ 1.21
SHKBP1-223ENST00000600552 SAMD7Q7Z3H4 446 aa22.63■■□□□ 1.21
SHKBP1-223ENST00000600552 STK31Q9BXU1 1019 aa22.63■■□□□ 1.21
SHKBP1-223ENST00000600552 ZC3H12CQ9C0D7 883 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-223ENST00000600552 PDE8AO60658 829 aa22.62■■□□□ 1.21
SHKBP1-223ENST00000600552 TBC1D10BQ4KMP7 808 aaPredicted RBP22.62■■□□□ 1.21
SHKBP1-223ENST00000600552 USP48Q86UV5 1035 aa22.62■■□□□ 1.21
SHKBP1-223ENST00000600552 CHMP4AQ9BY43 222 aa22.62■■□□□ 1.21
SHKBP1-223ENST00000600552 LRRC37AA6NMS7 1700 aa22.62■■□□□ 1.21
SHKBP1-223ENST00000600552 PI4KAP2A4QPH2 592 aa22.61■■□□□ 1.21
SHKBP1-223ENST00000600552 ECE1P42892 770 aa22.61■■□□□ 1.21
SHKBP1-223ENST00000600552 DLK2Q6UY11 383 aa22.61■■□□□ 1.21
SHKBP1-223ENST00000600552 PI4KAP1Q8N8J0 262 aa22.61■■□□□ 1.21
SHKBP1-223ENST00000600552 CDHR2Q9BYE9 1310 aa22.6■■□□□ 1.21
SHKBP1-223ENST00000600552 AOC2O75106 756 aa22.6■■□□□ 1.21
SHKBP1-223ENST00000600552 MAP2K1Q02750 393 aaPredicted RBP22.6■■□□□ 1.21
SHKBP1-223ENST00000600552 KSR2Q6VAB6 950 aa22.6■■□□□ 1.21
SHKBP1-223ENST00000600552 MRS2Q9HD23 443 aa22.6■■□□□ 1.21
SHKBP1-223ENST00000600552 GGA1Q9UJY5 639 aa22.6■■□□□ 1.21
SHKBP1-223ENST00000600552 TLL2Q9Y6L7 1015 aa22.6■■□□□ 1.21
SHKBP1-223ENST00000600552 CDC37L1Q7L3B6 337 aa22.59■■□□□ 1.21
SHKBP1-223ENST00000600552 BEGAINQ9BUH8 593 aa22.59■■□□□ 1.21
SHKBP1-223ENST00000600552 PRDM10Q9NQV6 1147 aa22.59■■□□□ 1.21
SHKBP1-223ENST00000600552 NEXNQ0ZGT2 675 aa22.58■■□□□ 1.21
SHKBP1-223ENST00000600552 TWISTNBQ3B726 338 aaPredicted RBP22.58■■□□□ 1.21
SHKBP1-223ENST00000600552 G2E3Q7L622 706 aa22.58■■□□□ 1.21
SHKBP1-223ENST00000600552 ANKRD18AQ8IVF6 992 aa22.58■■□□□ 1.21
SHKBP1-223ENST00000600552 WWC1Q8IX03 1113 aa22.58■■□□□ 1.21
SHKBP1-223ENST00000600552 ZC3H15Q8WU90 426 aaKnown RBP22.58■■□□□ 1.21
SHKBP1-223ENST00000600552 SLC4A2P04920 1241 aa22.57■■□□□ 1.2
SHKBP1-223ENST00000600552 HSPA8P11142 646 aaKnown RBP22.57■■□□□ 1.2
SHKBP1-223ENST00000600552 CWF19L2Q2TBE0 894 aaKnown RBP22.57■■□□□ 1.2
SHKBP1-223ENST00000600552 DPF2Q92785 391 aa22.57■■□□□ 1.2
SHKBP1-223ENST00000600552 PGAP2Q9UHJ9 254 aa22.57■■□□□ 1.2
SHKBP1-223ENST00000600552 RTL9Q8NET4 1388 aa22.56■■□□□ 1.2
SHKBP1-223ENST00000600552 EGFRP00533 1210 aa22.56■■□□□ 1.2
SHKBP1-223ENST00000600552 IGKV5-2P06315 115 aa22.56■■□□□ 1.2
SHKBP1-223ENST00000600552 TSKSQ9UJT2 592 aa22.56■■□□□ 1.2
SHKBP1-223ENST00000600552 SAPCD2Q86UD0 394 aa22.55■■□□□ 1.2
SHKBP1-223ENST00000600552 POLR2AP24928 1970 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-223ENST00000600552 ANP32CO43423 234 aa22.54■■□□□ 1.2
SHKBP1-223ENST00000600552 RPS12P25398 132 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-223ENST00000600552 CTSWP56202 376 aa22.54■■□□□ 1.2
SHKBP1-223ENST00000600552 KRT26Q7Z3Y9 468 aa22.54■■□□□ 1.2
SHKBP1-223ENST00000600552 DCPSQ96C86 337 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-223ENST00000600552 PODXL2Q9NZ53 605 aa22.54■■□□□ 1.2
SHKBP1-223ENST00000600552 UBE3BQ7Z3V4 1068 aa22.53■■□□□ 1.2
SHKBP1-223ENST00000600552 CDC5LQ99459 802 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-223ENST00000600552 WTIPA6NIX2 430 aaPredicted RBP22.52■■□□□ 1.2
SHKBP1-223ENST00000600552 ADM5C9JUS6 153 aa22.52■■□□□ 1.2
SHKBP1-223ENST00000600552 CCDC27Q2M243 656 aa22.52■■□□□ 1.2
SHKBP1-223ENST00000600552 KIF4BQ2VIQ3 1234 aa22.52■■□□□ 1.2
SHKBP1-223ENST00000600552 FBXW7Q969H0 707 aa22.52■■□□□ 1.2
SHKBP1-223ENST00000600552 GREM2Q9H772 168 aa22.52■■□□□ 1.2
SHKBP1-223ENST00000600552 XDHP47989 1333 aa22.52■■□□□ 1.2
SHKBP1-223ENST00000600552 SCN9AQ15858 1988 aa22.51■■□□□ 1.19
SHKBP1-223ENST00000600552 NEURL1BA8MQ27 555 aa22.51■■□□□ 1.19
SHKBP1-223ENST00000600552 VIL1P09327 827 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-223ENST00000600552 ATP2B4P23634 1241 aa22.51■■□□□ 1.19
SHKBP1-223ENST00000600552 HUNKP57058 714 aa22.51■■□□□ 1.19
SHKBP1-223ENST00000600552 TTLL11Q8NHH1 800 aa22.51■■□□□ 1.19
SHKBP1-223ENST00000600552 SPEF2Q9C093 1822 aa22.5■■□□□ 1.19
SHKBP1-223ENST00000600552 FKBP5Q13451 457 aaPredicted RBP22.5■■□□□ 1.19
SHKBP1-223ENST00000600552 ASTN2O75129 1339 aaPredicted RBP22.5■■□□□ 1.19
SHKBP1-223ENST00000600552 MAP2K2P36507 400 aa22.49■■□□□ 1.19
SHKBP1-223ENST00000600552 FLIIQ13045 1269 aa22.49■■□□□ 1.19
SHKBP1-223ENST00000600552 FANCIQ9NVI1 1328 aa22.49■■□□□ 1.19
SHKBP1-223ENST00000600552 ZEB1P37275 1124 aaPredicted RBP22.48■■□□□ 1.19
SHKBP1-223ENST00000600552 RSBN1LQ6PCB5 846 aaPredicted RBP22.48■■□□□ 1.19
SHKBP1-223ENST00000600552 GGA3Q9NZ52 723 aa22.48■■□□□ 1.19
SHKBP1-223ENST00000600552 MINPP1Q9UNW1 487 aa22.48■■□□□ 1.19
SHKBP1-223ENST00000600552 ZNF316A6NFI3 1004 aaPredicted RBP22.47■■□□□ 1.19
SHKBP1-223ENST00000600552 H7C1W4 665 aa22.47■■□□□ 1.19
SHKBP1-223ENST00000600552 IGHMBP2P38935 993 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-223ENST00000600552 EXOSC9Q06265 439 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-223ENST00000600552 SULF1Q8IWU6 871 aa22.47■■□□□ 1.19
SHKBP1-223ENST00000600552 C2orf69Q8N8R5 385 aa22.47■■□□□ 1.19
SHKBP1-223ENST00000600552 IL16Q14005 1332 aa22.47■■□□□ 1.19
SHKBP1-223ENST00000600552 SCARF1Q14162 830 aa22.46■■□□□ 1.19
SHKBP1-223ENST00000600552 GCKRQ14397 625 aa22.46■■□□□ 1.19
SHKBP1-223ENST00000600552 FAM9BQ8IZU0 186 aa22.46■■□□□ 1.19
SHKBP1-223ENST00000600552 GBA2Q9HCG7 927 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-223ENST00000600552 BSDC1Q9NW68 430 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-223ENST00000600552 MYH3P11055 1940 aa22.46■■□□□ 1.19
SHKBP1-223ENST00000600552 USP17L3A6NCW0 530 aa22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 USP17L4A6NCW7 530 aa22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 ANGEL2Q5VTE6 544 aaKnown RBP22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 USP17L1Q7RTZ2 530 aa22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 DNAAF4Q8WXU2 420 aa22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 ZIC5Q96T25 663 aa22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 MXD3Q9BW11 206 aa22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 SCAF8Q9UPN6 1271 aaKnown RBP22.45■■□□□ 1.18
SHKBP1-223ENST00000600552 USP17L8P0C7I0 530 aa22.44■■□□□ 1.18
SHKBP1-223ENST00000600552 CCT4P50991 539 aaKnown RBP22.44■■□□□ 1.18
SHKBP1-223ENST00000600552 FAM161AQ3B820 660 aa22.44■■□□□ 1.18
SHKBP1-223ENST00000600552 AGBL3Q8NEM8 1001 aa22.44■■□□□ 1.18
SHKBP1-223ENST00000600552 HHIPL1Q96JK4 782 aa22.44■■□□□ 1.18
SHKBP1-223ENST00000600552 MYH16Q9H6N6 1097 aa22.44■■□□□ 1.18
SHKBP1-223ENST00000600552 CHMP3Q9Y3E7 222 aa22.44■■□□□ 1.18
SHKBP1-223ENST00000600552 VAMP4O75379 141 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms