RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 NSFL1CQ9UNZ2 370 aaKnown RBP24.15■■□□□ 1.46
UPF1-209ENST00000600310 LRRC37AA6NMS7 1700 aa24.14■■□□□ 1.45
UPF1-209ENST00000600310 PODXL2Q9NZ53 605 aa24.14■■□□□ 1.45
UPF1-209ENST00000600310 SRGAP3O43295 1099 aa24.13■■□□□ 1.45
UPF1-209ENST00000600310 PRELPP51888 382 aa24.13■■□□□ 1.45
UPF1-209ENST00000600310 PTPN12Q05209 780 aaKnown RBP24.13■■□□□ 1.45
UPF1-209ENST00000600310 FER1L6Q2WGJ9 1857 aa24.13■■□□□ 1.45
UPF1-209ENST00000600310 LMNB1P20700 586 aa24.12■■□□□ 1.45
UPF1-209ENST00000600310 ATP8B2P98198 1209 aa24.12■■□□□ 1.45
UPF1-209ENST00000600310 SUPT20HQ8NEM7 779 aa24.12■■□□□ 1.45
UPF1-209ENST00000600310 KLHDC4Q8TBB5 520 aa24.12■■□□□ 1.45
UPF1-209ENST00000600310 CNNM1Q9NRU3 951 aa24.12■■□□□ 1.45
UPF1-209ENST00000600310 XDHP47989 1333 aa24.11■■□□□ 1.45
UPF1-209ENST00000600310 PNMA6EA0A0J9YXQ4 647 aa24.11■■□□□ 1.45
UPF1-209ENST00000600310 PUS3Q9BZE2 481 aaKnown RBP24.11■■□□□ 1.45
UPF1-209ENST00000600310 ANKRD2Q9GZV1 360 aa24.11■■□□□ 1.45
UPF1-209ENST00000600310 COPRSQ9NQ92 184 aa24.11■■□□□ 1.45
UPF1-209ENST00000600310 ZNF277Q9NRM2 450 aaPredicted RBP24.11■■□□□ 1.45
UPF1-209ENST00000600310 ANKIB1Q9P2G1 1089 aa24.11■■□□□ 1.45
UPF1-209ENST00000600310 RIPOR2Q9Y4F9 1068 aa24.11■■□□□ 1.45
UPF1-209ENST00000600310 CHRNDQ07001 517 aa24.1■■□□□ 1.45
UPF1-209ENST00000600310 CEP85Q6P2H3 762 aa24.1■■□□□ 1.45
UPF1-209ENST00000600310 CRBNQ96SW2 442 aa24.1■■□□□ 1.45
UPF1-209ENST00000600310 FBXO3Q9UK99 471 aa24.1■■□□□ 1.45
UPF1-209ENST00000600310 EYA2O00167 538 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 ATP2B4P23634 1241 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 POLA2Q14181 598 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 LRRC24Q50LG9 513 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 C9orf131Q5VYM1 1079 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 TBC1D16Q8TBP0 767 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 VPS33BQ9H267 617 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 POLLQ9UGP5 575 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 GGA1Q9UJY5 639 aa24.09■■□□□ 1.45
UPF1-209ENST00000600310 IARSP41252 1262 aaKnown RBP24.08■■□□□ 1.45
UPF1-209ENST00000600310 SSH3Q8TE77 659 aa24.08■■□□□ 1.45
UPF1-209ENST00000600310 RNF181Q9P0P0 153 aa24.08■■□□□ 1.45
UPF1-209ENST00000600310 PA2G4Q9UQ80 394 aaKnown RBP24.08■■□□□ 1.45
UPF1-209ENST00000600310 LEMD3Q9Y2U8 911 aa24.08■■□□□ 1.45
UPF1-209ENST00000600310 C6orf229H3BNL8 230 aa24.07■■□□□ 1.44
UPF1-209ENST00000600310 CIAO1O76071 339 aa24.07■■□□□ 1.44
UPF1-209ENST00000600310 UFL1O94874 794 aa24.07■■□□□ 1.44
UPF1-209ENST00000600310 RPAP2Q8IXW5 612 aaPredicted RBP24.07■■□□□ 1.44
UPF1-209ENST00000600310 DUOX1Q9NRD9 1551 aa24.07■■□□□ 1.44
UPF1-209ENST00000600310 MROH5Q6ZUA9 1318 aa24.07■■□□□ 1.44
UPF1-209ENST00000600310 HELBQ8NG08 1087 aaPredicted RBP24.06■■□□□ 1.44
UPF1-209ENST00000600310 LTBP1Q14766 1721 aa24.06■■□□□ 1.44
UPF1-209ENST00000600310 KIAA2012Q0VF49 1180 aa24.05■■□□□ 1.44
UPF1-209ENST00000600310 ATG9AQ7Z3C6 839 aa24.05■■□□□ 1.44
UPF1-209ENST00000600310 EYA3Q99504 573 aa24.05■■□□□ 1.44
UPF1-209ENST00000600310 SPEF2Q9C093 1822 aa24.05■■□□□ 1.44
UPF1-209ENST00000600310 PPIP5K2O43314 1243 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 TAF5LO75529 589 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 AOC3Q16853 763 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 WASHC4Q2M389 1173 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 METTL24Q5JXM2 366 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 LARGE2Q8N3Y3 721 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 SIL1Q9H173 461 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 ZNF804BA4D1E1 1349 aa24.04■■□□□ 1.44
UPF1-209ENST00000600310 WTIPA6NIX2 430 aaPredicted RBP24.03■■□□□ 1.44
UPF1-209ENST00000600310 IL15P40933 162 aaPredicted RBP24.03■■□□□ 1.44
UPF1-209ENST00000600310 SBF1O95248 1867 aa24.02■■□□□ 1.44
UPF1-209ENST00000600310 C1QTNF8P60827 252 aa24.02■■□□□ 1.44
UPF1-209ENST00000600310 SIRT2Q8IXJ6 389 aa24.02■■□□□ 1.44
UPF1-209ENST00000600310 VGLL2Q8N8G2 317 aa24.02■■□□□ 1.44
UPF1-209ENST00000600310 GPR101Q96P66 508 aaPredicted RBP24.02■■□□□ 1.44
UPF1-209ENST00000600310 ZC3H12CQ9C0D7 883 aaKnown RBP24.02■■□□□ 1.44
UPF1-209ENST00000600310 PDE8BO95263 885 aa24.01■■□□□ 1.43
UPF1-209ENST00000600310 CENPBP07199 599 aaPredicted RBP24.01■■□□□ 1.43
UPF1-209ENST00000600310 KCNJ4P48050 445 aa24.01■■□□□ 1.43
UPF1-209ENST00000600310 NOP58Q9Y2X3 529 aaKnown RBP24.01■■□□□ 1.43
UPF1-209ENST00000600310 ZC3H4Q9UPT8 1303 aaKnown RBP24.01■■□□□ 1.43
UPF1-209ENST00000600310 SNAP23O00161 211 aa24■■□□□ 1.43
UPF1-209ENST00000600310 RIMBP2O15034 1052 aa24■■□□□ 1.43
UPF1-209ENST00000600310 HMMRO75330 724 aa24■■□□□ 1.43
UPF1-209ENST00000600310 AAMPQ13685 434 aa24■■□□□ 1.43
UPF1-209ENST00000600310 UBE4AQ14139 1066 aa24■■□□□ 1.43
UPF1-209ENST00000600310 NIM1KQ8IY84 436 aa24■■□□□ 1.43
UPF1-209ENST00000600310 JDP2Q8WYK2 163 aa24■■□□□ 1.43
UPF1-209ENST00000600310 MED23Q9ULK4 1368 aa24■■□□□ 1.43
UPF1-209ENST00000600310 SURF6O75683 361 aaKnown RBP23.99■■□□□ 1.43
UPF1-209ENST00000600310 G3BP1Q13283 466 aaKnown RBP eCLIP23.99■■□□□ 1.431e-6■□□□□ 10.2
UPF1-209ENST00000600310 C15orf52Q6ZUT6 534 aaKnown RBP23.99■■□□□ 1.43
UPF1-209ENST00000600310 CEP126Q9P2H0 1117 aa23.99■■□□□ 1.43
UPF1-209ENST00000600310 EXOC6Q8TAG9 804 aa23.98■■□□□ 1.43
UPF1-209ENST00000600310 COL4A5P29400 1685 aa23.98■■□□□ 1.43
UPF1-209ENST00000600310 FZD9O00144 591 aa23.97■■□□□ 1.43
UPF1-209ENST00000600310 ZNRF3Q9ULT6 936 aa23.97■■□□□ 1.43
UPF1-209ENST00000600310 IRS2Q9Y4H2 1338 aa23.97■■□□□ 1.43
UPF1-209ENST00000600310 PCDHB15Q9Y5E8 787 aa23.97■■□□□ 1.43
UPF1-209ENST00000600310 FGFR2P21802 821 aa23.96■■□□□ 1.43
UPF1-209ENST00000600310 KLRK1P26718 216 aa23.96■■□□□ 1.43
UPF1-209ENST00000600310 PUM3Q15397 648 aaKnown RBP23.96■■□□□ 1.43
UPF1-209ENST00000600310 TXNRD3Q86VQ6 643 aa23.96■■□□□ 1.43
UPF1-209ENST00000600310 CCDC88AQ3V6T2 1871 aa23.96■■□□□ 1.43
UPF1-209ENST00000600310 DOK7Q18PE1 504 aa23.95■■□□□ 1.42
UPF1-209ENST00000600310 DICER1Q9UPY3 1922 aaKnown RBP23.94■■□□□ 1.42
UPF1-209ENST00000600310 A0A1B0GUL6 1792 aa23.94■■□□□ 1.42
UPF1-209ENST00000600310 SASH1O94885 1247 aa23.94■■□□□ 1.42
UPF1-209ENST00000600310 IRX6P78412 446 aaPredicted RBP23.94■■□□□ 1.42
UPF1-209ENST00000600310 TFCP2Q12800 502 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms