RNA–Protein interactions for RNA: ENST00000598359.5

SCAF1-203, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-203ENST00000598359 TTLL11Q8NHH1 800 aa17.57■□□□□ 0.4
SCAF1-203ENST00000598359 GREM2Q9H772 168 aa17.57■□□□□ 0.4
SCAF1-203ENST00000598359 KCNQ5Q9NR82 932 aa17.57■□□□□ 0.4
SCAF1-203ENST00000598359 GPRC5DQ9NZD1 345 aa17.57■□□□□ 0.4
SCAF1-203ENST00000598359 PCDH10Q9P2E7 1040 aa17.57■□□□□ 0.4
SCAF1-203ENST00000598359 SHTN1A0MZ66 631 aa17.56■□□□□ 0.4
SCAF1-203ENST00000598359 WTIPA6NIX2 430 aaPredicted RBP17.56■□□□□ 0.4
SCAF1-203ENST00000598359 UFL1O94874 794 aa17.56■□□□□ 0.4
SCAF1-203ENST00000598359 FMR1Q06787 632 aaKnown RBP eCLIP17.56■□□□□ 0.4
SCAF1-203ENST00000598359 FAM161AQ3B820 660 aa17.56■□□□□ 0.4
SCAF1-203ENST00000598359 ANKRD18AQ8IVF6 992 aa17.56■□□□□ 0.4
SCAF1-203ENST00000598359 CNTROBQ8N137 903 aa17.56■□□□□ 0.4
SCAF1-203ENST00000598359 ANKIB1Q9P2G1 1089 aa17.56■□□□□ 0.4
SCAF1-203ENST00000598359 ECE2O60344 883 aa17.55■□□□□ 0.4
SCAF1-203ENST00000598359 CTCFP49711 727 aaPredicted RBP17.55■□□□□ 0.4
SCAF1-203ENST00000598359 LINS1Q8NG48 757 aa17.55■□□□□ 0.4
SCAF1-203ENST00000598359 BCL2L13Q9BXK5 485 aa17.55■□□□□ 0.4
SCAF1-203ENST00000598359 ZBTB12Q9Y330 459 aaPredicted RBP17.55■□□□□ 0.4
SCAF1-203ENST00000598359 PSMD14O00487 310 aa17.54■□□□□ 0.4
SCAF1-203ENST00000598359 CASP7P55210 303 aa17.54■□□□□ 0.4
SCAF1-203ENST00000598359 TNIP1Q15025 636 aa17.54■□□□□ 0.4
SCAF1-203ENST00000598359 AIDAQ96BJ3 306 aa17.54■□□□□ 0.4
SCAF1-203ENST00000598359 EYA3Q99504 573 aa17.54■□□□□ 0.4
SCAF1-203ENST00000598359 PODXL2Q9NZ53 605 aa17.54■□□□□ 0.4
SCAF1-203ENST00000598359 GGA1Q9UJY5 639 aa17.54■□□□□ 0.4
SCAF1-203ENST00000598359 CNTNAP1P78357 1384 aa17.53■□□□□ 0.4
SCAF1-203ENST00000598359 USP50Q70EL3 339 aaPredicted RBP17.53■□□□□ 0.4
SCAF1-203ENST00000598359 ADARB2Q9NS39 739 aaKnown RBP17.53■□□□□ 0.4
SCAF1-203ENST00000598359 SPEF2Q9C093 1822 aa17.53■□□□□ 0.4
SCAF1-203ENST00000598359 RTL9Q8NET4 1388 aa17.53■□□□□ 0.4
SCAF1-203ENST00000598359 BEND3Q5T5X7 828 aa17.52■□□□□ 0.4
SCAF1-203ENST00000598359 TRPM4Q8TD43 1214 aa17.52■□□□□ 0.4
SCAF1-203ENST00000598359 CDC5LQ99459 802 aaKnown RBP17.52■□□□□ 0.4
SCAF1-203ENST00000598359 ZC3H12CQ9C0D7 883 aaKnown RBP17.52■□□□□ 0.4
SCAF1-203ENST00000598359 MYH3P11055 1940 aa17.51■□□□□ 0.39
SCAF1-203ENST00000598359 TMEM88BA6NKF7 163 aa17.51■□□□□ 0.39
SCAF1-203ENST00000598359 TRAF5O00463 557 aa17.51■□□□□ 0.39
SCAF1-203ENST00000598359 LBX1P52954 281 aa17.51■□□□□ 0.39
SCAF1-203ENST00000598359 HIRAP54198 1017 aaPredicted RBP17.51■□□□□ 0.39
SCAF1-203ENST00000598359 ABHD8Q96I13 439 aa17.51■□□□□ 0.39
SCAF1-203ENST00000598359 CNOT7Q9UIV1 285 aaKnown RBP17.51■□□□□ 0.39
SCAF1-203ENST00000598359 MINPP1Q9UNW1 487 aa17.51■□□□□ 0.39
SCAF1-203ENST00000598359 XDHP47989 1333 aa17.5■□□□□ 0.39
SCAF1-203ENST00000598359 CACNA1FO60840 1977 aa17.5■□□□□ 0.39
SCAF1-203ENST00000598359 ITGA6P23229 1130 aa17.5■□□□□ 0.39
SCAF1-203ENST00000598359 SLC4A10Q6U841 1118 aa17.5■□□□□ 0.39
SCAF1-203ENST00000598359 MICALL2Q8IY33 904 aa17.5■□□□□ 0.39
SCAF1-203ENST00000598359 CDCA7LQ96GN5 454 aa17.5■□□□□ 0.39
SCAF1-203ENST00000598359 PLA2G12BQ9BX93 195 aa17.5■□□□□ 0.39
SCAF1-203ENST00000598359 BSDC1Q9NW68 430 aaPredicted RBP17.5■□□□□ 0.39
SCAF1-203ENST00000598359 G3V3G9 751 aa17.49■□□□□ 0.39
SCAF1-203ENST00000598359 VEGFBP49765 207 aa17.49■□□□□ 0.39
SCAF1-203ENST00000598359 DCAF8Q5TAQ9 597 aa17.49■□□□□ 0.39
SCAF1-203ENST00000598359 SCN9AQ15858 1988 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 E9PSI1 815 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 EGFRP00533 1210 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 CSF1RP07333 972 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 ATP2B4P23634 1241 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 FOXO4P98177 505 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 SLFN5Q08AF3 891 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 SAMD7Q7Z3H4 446 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 WBP1LQ9NX94 342 aa17.48■□□□□ 0.39
SCAF1-203ENST00000598359 H7C1D1 291 aa17.47■□□□□ 0.39
SCAF1-203ENST00000598359 IGHMBP2P38935 993 aaKnown RBP17.47■□□□□ 0.39
SCAF1-203ENST00000598359 TBC1D10BQ4KMP7 808 aaPredicted RBP17.47■□□□□ 0.39
SCAF1-203ENST00000598359 EPHA10Q5JZY3 1008 aa17.47■□□□□ 0.39
SCAF1-203ENST00000598359 MRPL50Q8N5N7 158 aaKnown RBP17.47■□□□□ 0.39
SCAF1-203ENST00000598359 GLIS2Q9BZE0 524 aaPredicted RBP17.47■□□□□ 0.39
SCAF1-203ENST00000598359 CHMP3Q9Y3E7 222 aa17.47■□□□□ 0.39
SCAF1-203ENST00000598359 CCT4P50991 539 aaKnown RBP17.46■□□□□ 0.39
SCAF1-203ENST00000598359 MLLT1Q03111 559 aaPredicted RBP17.46■□□□□ 0.39
SCAF1-203ENST00000598359 RBM26Q5T8P6 1007 aaKnown RBP17.46■□□□□ 0.39
SCAF1-203ENST00000598359 DLK2Q6UY11 383 aa17.46■□□□□ 0.39
SCAF1-203ENST00000598359 DPF2Q92785 391 aa17.46■□□□□ 0.39
SCAF1-203ENST00000598359 CCER2I3L3R5 266 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 GRM8O00222 908 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 VIL1P09327 827 aaKnown RBP17.45■□□□□ 0.38
SCAF1-203ENST00000598359 KLRK1P26718 216 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 CST9Q5W186 159 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 LMBR1LQ6UX01 489 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 TXNRD3Q86VQ6 643 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 SSH1Q8WYL5 1049 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 MPHOSPH8Q99549 860 aa17.45■□□□□ 0.38
SCAF1-203ENST00000598359 ABT1Q9ULW3 272 aaKnown RBP17.45■□□□□ 0.38
SCAF1-203ENST00000598359 ANKRD18BA2A2Z9 1011 aa17.44■□□□□ 0.38
SCAF1-203ENST00000598359 SNAP23O00161 211 aa17.44■□□□□ 0.38
SCAF1-203ENST00000598359 ZNF594Q96JF6 807 aaPredicted RBP17.44■□□□□ 0.38
SCAF1-203ENST00000598359 SRCIN1Q9C0H9 1055 aa17.44■□□□□ 0.38
SCAF1-203ENST00000598359 C9orf78Q9NZ63 289 aaPredicted RBP17.44■□□□□ 0.38
SCAF1-203ENST00000598359 PGAP2Q9UHJ9 254 aa17.44■□□□□ 0.38
SCAF1-203ENST00000598359 MED23Q9ULK4 1368 aa17.43■□□□□ 0.38
SCAF1-203ENST00000598359 HSPA8P11142 646 aaKnown RBP17.43■□□□□ 0.38
SCAF1-203ENST00000598359 RPS12P25398 132 aaKnown RBP17.43■□□□□ 0.38
SCAF1-203ENST00000598359 HELBQ8NG08 1087 aaPredicted RBP17.43■□□□□ 0.38
SCAF1-203ENST00000598359 MXD3Q9BW11 206 aa17.43■□□□□ 0.38
SCAF1-203ENST00000598359 CCDC85CA6NKD9 419 aa17.42■□□□□ 0.38
SCAF1-203ENST00000598359 TAF5LO75529 589 aa17.42■□□□□ 0.38
SCAF1-203ENST00000598359 ALDH1L1O75891 902 aa17.42■□□□□ 0.38
SCAF1-203ENST00000598359 CHRNDQ07001 517 aa17.42■□□□□ 0.38
SCAF1-203ENST00000598359 IFIT5Q13325 482 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms