RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 VIL1P09327 827 aaKnown RBP16.2■□□□□ 0.18
TRIM28-212ENST00000597995 HUNKP57058 714 aa16.2■□□□□ 0.18
TRIM28-212ENST00000597995 DOK7Q18PE1 504 aa16.2■□□□□ 0.18
TRIM28-212ENST00000597995 TBC1D10BQ4KMP7 808 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-212ENST00000597995 KRT26Q7Z3Y9 468 aa16.2■□□□□ 0.18
TRIM28-212ENST00000597995 DCPSQ96C86 337 aaKnown RBP16.2■□□□□ 0.18
TRIM28-212ENST00000597995 RTL9Q8NET4 1388 aa16.2■□□□□ 0.18
TRIM28-212ENST00000597995 CCDC85CA6NKD9 419 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 RGS19P49795 217 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 GNAI1P63096 354 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 CALD1Q05682 793 aaKnown RBP16.19■□□□□ 0.18
TRIM28-212ENST00000597995 C2orf69Q8N8R5 385 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 CCDC191Q8NCU4 936 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 CHMP4AQ9BY43 222 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 GBA2Q9HCG7 927 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-212ENST00000597995 KCNQ5Q9NR82 932 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 IFT57Q9NWB7 429 aa16.19■□□□□ 0.18
TRIM28-212ENST00000597995 POLR2AP24928 1970 aaKnown RBP16.18■□□□□ 0.18
TRIM28-212ENST00000597995 EGFRP00533 1210 aa16.18■□□□□ 0.18
TRIM28-212ENST00000597995 PCCAP05165 728 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-212ENST00000597995 RBM26Q5T8P6 1007 aaKnown RBP16.18■□□□□ 0.18
TRIM28-212ENST00000597995 RGMBQ6NW40 437 aa16.18■□□□□ 0.18
TRIM28-212ENST00000597995 CCDC102AQ96A19 550 aa16.18■□□□□ 0.18
TRIM28-212ENST00000597995 PHAXQ9H814 394 aaKnown RBP16.18■□□□□ 0.18
TRIM28-212ENST00000597995 COL4A1P02462 1669 aa16.18■□□□□ 0.18
TRIM28-212ENST00000597995 G3V3G9 751 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 PDE8AO60658 829 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 KIF4BQ2VIQ3 1234 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 FAM161AQ3B820 660 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 CCDC152Q4G0S7 254 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 DCAF8Q5TAQ9 597 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 DLK2Q6UY11 383 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 MYD88Q99836 296 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 SEC31BQ9NQW1 1179 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 ANKIB1Q9P2G1 1089 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 GGA1Q9UJY5 639 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 CASP8AP2Q9UKL3 1982 aa16.17■□□□□ 0.18
TRIM28-212ENST00000597995 FAM155AB1AL88 458 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-212ENST00000597995 APAF1O14727 1248 aa16.16■□□□□ 0.18
TRIM28-212ENST00000597995 UFL1O94874 794 aa16.16■□□□□ 0.18
TRIM28-212ENST00000597995 SULF1Q8IWU6 871 aa16.16■□□□□ 0.18
TRIM28-212ENST00000597995 AGBL3Q8NEM8 1001 aa16.16■□□□□ 0.18
TRIM28-212ENST00000597995 ZIC5Q96T25 663 aa16.16■□□□□ 0.18
TRIM28-212ENST00000597995 MCOLN1Q9GZU1 580 aa16.16■□□□□ 0.18
TRIM28-212ENST00000597995 CWC25Q9NXE8 425 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-212ENST00000597995 ZNF609O15014 1411 aa16.16■□□□□ 0.18
TRIM28-212ENST00000597995 ADM5C9JUS6 153 aa16.15■□□□□ 0.18
TRIM28-212ENST00000597995 ELL2O00472 640 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-212ENST00000597995 DDX58O95786 925 aaKnown RBP16.15■□□□□ 0.18
TRIM28-212ENST00000597995 ZNF280AP59817 542 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-212ENST00000597995 MLLT1Q03111 559 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-212ENST00000597995 METTL22Q9BUU2 404 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-212ENST00000597995 SAGE1Q9NXZ1 904 aa16.15■□□□□ 0.18
TRIM28-212ENST00000597995 SCN9AQ15858 1988 aa16.15■□□□□ 0.18
TRIM28-212ENST00000597995 CCDC30Q5VVM6 783 aa16.14■□□□□ 0.17
TRIM28-212ENST00000597995 RSBN1LQ6PCB5 846 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-212ENST00000597995 ANKRD18AQ8IVF6 992 aa16.14■□□□□ 0.17
TRIM28-212ENST00000597995 GGA3Q9NZ52 723 aa16.14■□□□□ 0.17
TRIM28-212ENST00000597995 ATP2B4P23634 1241 aa16.13■□□□□ 0.17
TRIM28-212ENST00000597995 ZNF157P51786 506 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-212ENST00000597995 KIF23Q02241 960 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-212ENST00000597995 DGKZQ13574 1117 aa16.13■□□□□ 0.17
TRIM28-212ENST00000597995 C8orf58Q8NAV2 365 aa16.13■□□□□ 0.17
TRIM28-212ENST00000597995 XDHP47989 1333 aa16.13■□□□□ 0.17
TRIM28-212ENST00000597995 PODNQ7Z5L7 613 aa16.12■□□□□ 0.17
TRIM28-212ENST00000597995 REM2Q8IYK8 340 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-212ENST00000597995 GMLQ99445 158 aa16.12■□□□□ 0.17
TRIM28-212ENST00000597995 SLC10A3P09131 477 aa16.11■□□□□ 0.17
TRIM28-212ENST00000597995 USP17L8P0C7I0 530 aa16.11■□□□□ 0.17
TRIM28-212ENST00000597995 FKBP1BP68106 108 aa16.11■□□□□ 0.17
TRIM28-212ENST00000597995 SCARF1Q14162 830 aa16.11■□□□□ 0.17
TRIM28-212ENST00000597995 CDCA5Q96FF9 252 aa16.11■□□□□ 0.17
TRIM28-212ENST00000597995 CDC5LQ99459 802 aaKnown RBP16.11■□□□□ 0.17
TRIM28-212ENST00000597995 MAP3K2Q9Y2U5 619 aa16.11■□□□□ 0.17
TRIM28-212ENST00000597995 ASTN2O75129 1339 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-212ENST00000597995 USP17L3A6NCW0 530 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 USP17L4A6NCW7 530 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 ANGEL2Q5VTE6 544 aaKnown RBP16.1■□□□□ 0.17
TRIM28-212ENST00000597995 KSR2Q6VAB6 950 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 USP17L1Q7RTZ2 530 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 JARID2Q92833 1246 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-212ENST00000597995 CCDC85AQ96PX6 553 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-212ENST00000597995 MYOZ2Q9NPC6 264 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 RNF186Q9NXI6 227 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 PITPNM2Q9BZ72 1349 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 PSME4Q14997 1843 aa16.1■□□□□ 0.17
TRIM28-212ENST00000597995 CTSWP56202 376 aa16.09■□□□□ 0.17
TRIM28-212ENST00000597995 TTLL11Q8NHH1 800 aa16.09■□□□□ 0.17
TRIM28-212ENST00000597995 CSRNP1Q96S65 589 aa16.09■□□□□ 0.17
TRIM28-212ENST00000597995 BSDC1Q9NW68 430 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-212ENST00000597995 PI4KAP2A4QPH2 592 aa16.08■□□□□ 0.16
TRIM28-212ENST00000597995 IGKV5-2P06315 115 aa16.08■□□□□ 0.16
TRIM28-212ENST00000597995 NEXNQ0ZGT2 675 aa16.08■□□□□ 0.16
TRIM28-212ENST00000597995 TSPYL6Q8N831 410 aa16.08■□□□□ 0.16
TRIM28-212ENST00000597995 PI4KAP1Q8N8J0 262 aa16.08■□□□□ 0.16
TRIM28-212ENST00000597995 MINPP1Q9UNW1 487 aa16.08■□□□□ 0.16
TRIM28-212ENST00000597995 TRPA1O75762 1119 aa16.07■□□□□ 0.16
TRIM28-212ENST00000597995 MMP14P50281 582 aa16.07■□□□□ 0.16
TRIM28-212ENST00000597995 MED23Q9ULK4 1368 aa16.07■□□□□ 0.16
TRIM28-212ENST00000597995 AKAP11Q9UKA4 1901 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms