RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 DDX60Q8IY21 1712 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-215ENST00000597649 IRS4O14654 1257 aaPredicted RBP21.44■■□□□ 1.02
SHKBP1-215ENST00000597649 RPS12P25398 132 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-215ENST00000597649 RPS8P62241 208 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-215ENST00000597649 TRIM28Q13263 835 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-215ENST00000597649 POLR2AP24928 1970 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-215ENST00000597649 ASTN2O75129 1339 aaPredicted RBP21.44■■□□□ 1.02
SHKBP1-215ENST00000597649 VIL1P09327 827 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-215ENST00000597649 KIF23Q02241 960 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-215ENST00000597649 SEC31BQ9NQW1 1179 aa21.43■■□□□ 1.02
SHKBP1-215ENST00000597649 DBF4Q9UBU7 674 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-215ENST00000597649 HOXB7P09629 217 aa21.42■■□□□ 1.02
SHKBP1-215ENST00000597649 C2orf69Q8N8R5 385 aa21.42■■□□□ 1.02
SHKBP1-215ENST00000597649 DCPSQ96C86 337 aaKnown RBP21.42■■□□□ 1.02
SHKBP1-215ENST00000597649 EYA3Q99504 573 aa21.42■■□□□ 1.02
SHKBP1-215ENST00000597649 ZNF157P51786 506 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-215ENST00000597649 DUSP27Q5VZP5 1158 aa21.41■■□□□ 1.02
SHKBP1-215ENST00000597649 CCDC102AQ96A19 550 aa21.41■■□□□ 1.02
SHKBP1-215ENST00000597649 RUNDC1Q96C34 613 aa21.41■■□□□ 1.02
SHKBP1-215ENST00000597649 HYPKQ9NX55 129 aa21.41■■□□□ 1.02
SHKBP1-215ENST00000597649 KIF4BQ2VIQ3 1234 aa21.4■■□□□ 1.02
SHKBP1-215ENST00000597649 RNF186Q9NXI6 227 aa21.4■■□□□ 1.02
SHKBP1-215ENST00000597649 PODXL2Q9NZ53 605 aa21.4■■□□□ 1.02
SHKBP1-215ENST00000597649 ZC3H12CQ9C0D7 883 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-215ENST00000597649 GGA3Q9NZ52 723 aa21.39■■□□□ 1.01
SHKBP1-215ENST00000597649 SCN9AQ15858 1988 aa21.38■■□□□ 1.01
SHKBP1-215ENST00000597649 TRPA1O75762 1119 aa21.38■■□□□ 1.01
SHKBP1-215ENST00000597649 ZBTB38Q8NAP3 1195 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-215ENST00000597649 CSRNP1Q96S65 589 aa21.38■■□□□ 1.01
SHKBP1-215ENST00000597649 PHAXQ9H814 394 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-215ENST00000597649 SAGE1Q9NXZ1 904 aa21.38■■□□□ 1.01
SHKBP1-215ENST00000597649 ADAMTS8Q9UP79 889 aa21.38■■□□□ 1.01
SHKBP1-215ENST00000597649 PDE4DIPQ5VU43 2346 aa21.37■■□□□ 1.01
SHKBP1-215ENST00000597649 UFL1O94874 794 aa21.37■■□□□ 1.01
SHKBP1-215ENST00000597649 SLC10A3P09131 477 aa21.37■■□□□ 1.01
SHKBP1-215ENST00000597649 ZNF280AP59817 542 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-215ENST00000597649 JARID2Q92833 1246 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-215ENST00000597649 CDCA5Q96FF9 252 aa21.37■■□□□ 1.01
SHKBP1-215ENST00000597649 MBIPQ9NS73 344 aa21.37■■□□□ 1.01
SHKBP1-215ENST00000597649 SCARF1Q14162 830 aa21.36■■□□□ 1.01
SHKBP1-215ENST00000597649 RIC3Q7Z5B4 369 aa21.36■■□□□ 1.01
SHKBP1-215ENST00000597649 SULF1Q8IWU6 871 aa21.36■■□□□ 1.01
SHKBP1-215ENST00000597649 ANKIB1Q9P2G1 1089 aa21.36■■□□□ 1.01
SHKBP1-215ENST00000597649 WTIPA6NIX2 430 aaPredicted RBP21.35■■□□□ 1.01
SHKBP1-215ENST00000597649 ZNF853P0CG23 659 aa21.35■■□□□ 1.01
SHKBP1-215ENST00000597649 GMLQ99445 158 aa21.35■■□□□ 1.01
SHKBP1-215ENST00000597649 GGA1Q9UJY5 639 aa21.35■■□□□ 1.01
SHKBP1-215ENST00000597649 MYBBP1AQ9BQG0 1328 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-215ENST00000597649 ANGEL2Q5VTE6 544 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-215ENST00000597649 RSBN1LQ6PCB5 846 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-215ENST00000597649 CCDC85AQ96PX6 553 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-215ENST00000597649 MYD88Q99836 296 aa21.34■■□□□ 1.01
SHKBP1-215ENST00000597649 AGBL3Q8NEM8 1001 aa21.33■■□□□ 1.01
SHKBP1-215ENST00000597649 SCAF8Q9UPN6 1271 aaKnown RBP21.33■■□□□ 1.01
SHKBP1-215ENST00000597649 G3V3G9 751 aa21.32■■□□□ 1
SHKBP1-215ENST00000597649 ELL2O00472 640 aaPredicted RBP21.32■■□□□ 1
SHKBP1-215ENST00000597649 PCCAP05165 728 aaPredicted RBP21.32■■□□□ 1
SHKBP1-215ENST00000597649 DCAF8Q5TAQ9 597 aa21.32■■□□□ 1
SHKBP1-215ENST00000597649 RASAL3Q86YV0 1011 aa21.32■■□□□ 1
SHKBP1-215ENST00000597649 PDE8AO60658 829 aa21.31■■□□□ 1
SHKBP1-215ENST00000597649 SOX10P56693 466 aa21.31■■□□□ 1
SHKBP1-215ENST00000597649 GOLGA2Q08379 1002 aa21.31■■□□□ 1
SHKBP1-215ENST00000597649 WDR43Q15061 677 aaKnown RBP eCLIP21.31■■□□□ 1
SHKBP1-215ENST00000597649 CCDC152Q4G0S7 254 aa21.31■■□□□ 1
SHKBP1-215ENST00000597649 MOB2Q70IA6 237 aa21.31■■□□□ 1
SHKBP1-215ENST00000597649 CCDC191Q8NCU4 936 aa21.31■■□□□ 1
SHKBP1-215ENST00000597649 MYOZ2Q9NPC6 264 aa21.3■■□□□ 1
SHKBP1-215ENST00000597649 USP17L8P0C7I0 530 aa21.29■■□□□ 1
SHKBP1-215ENST00000597649 PRAMEF18Q5VWM3 479 aa21.29■■□□□ 1
SHKBP1-215ENST00000597649 ZNF609O15014 1411 aa21.29■■□□□ 1
SHKBP1-215ENST00000597649 C8orf58Q8NAV2 365 aa21.28■■□□□ 1
SHKBP1-215ENST00000597649 CWC25Q9NXE8 425 aaPredicted RBP21.28■■□□□ 1
SHKBP1-215ENST00000597649 XDHP47989 1333 aa21.28■■□□□ 1
SHKBP1-215ENST00000597649 USP17L3A6NCW0 530 aa21.27■■□□□ 1
SHKBP1-215ENST00000597649 USP17L4A6NCW7 530 aa21.27■■□□□ 1
SHKBP1-215ENST00000597649 UBE2Q2LH0YL09 131 aa21.27■■□□□ 1
SHKBP1-215ENST00000597649 HSP90B1P14625 803 aaKnown RBP21.27■■□□□ 1
SHKBP1-215ENST00000597649 USP17L1Q7RTZ2 530 aa21.27■■□□□ 1
SHKBP1-215ENST00000597649 CTU1Q7Z7A3 348 aaKnown RBP21.27■■□□□ 1
SHKBP1-215ENST00000597649 ANKRD18AQ8IVF6 992 aa21.27■■□□□ 1
SHKBP1-215ENST00000597649 METTL22Q9BUU2 404 aaPredicted RBP21.27■■□□□ 1
SHKBP1-215ENST00000597649 MXD3Q9BW11 206 aa21.27■■□□□ 1
SHKBP1-215ENST00000597649 ATP2B4P23634 1241 aa21.26■□□□□ 0.99
SHKBP1-215ENST00000597649 FKBP1BP68106 108 aa21.26■□□□□ 0.99
SHKBP1-215ENST00000597649 NBPF9Q3BBW0 867 aa21.26■□□□□ 0.99
SHKBP1-215ENST00000597649 PODNQ7Z5L7 613 aa21.26■□□□□ 0.99
SHKBP1-215ENST00000597649 IFT57Q9NWB7 429 aa21.26■□□□□ 0.99
SHKBP1-215ENST00000597649 PITPNM2Q9BZ72 1349 aa21.26■□□□□ 0.99
SHKBP1-215ENST00000597649 APAF1O14727 1248 aa21.25■□□□□ 0.99
SHKBP1-215ENST00000597649 REM2Q8IYK8 340 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-215ENST00000597649 AKAP11Q9UKA4 1901 aa21.24■□□□□ 0.99
SHKBP1-215ENST00000597649 IGKV5-2P06315 115 aa21.24■□□□□ 0.99
SHKBP1-215ENST00000597649 MINPP1Q9UNW1 487 aa21.24■□□□□ 0.99
SHKBP1-215ENST00000597649 TBC1D8O95759 1140 aa21.23■□□□□ 0.99
SHKBP1-215ENST00000597649 CTSWP56202 376 aa21.23■□□□□ 0.99
SHKBP1-215ENST00000597649 GNAI1P63096 354 aa21.23■□□□□ 0.99
SHKBP1-215ENST00000597649 DACT2Q5SW24 774 aa21.23■□□□□ 0.99
SHKBP1-215ENST00000597649 TTLL11Q8NHH1 800 aa21.23■□□□□ 0.99
SHKBP1-215ENST00000597649 MAP3K2Q9Y2U5 619 aa21.23■□□□□ 0.99
SHKBP1-215ENST00000597649 TSPYL6Q8N831 410 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms