RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CELF1Q92879 486 aaKnown RBP13.29□□□□□ -0.28
TRIM28-210ENST00000597618 HDAC9Q9UKV0 1011 aa13.29□□□□□ -0.28
TRIM28-210ENST00000597618 ZNF609O15014 1411 aa13.29□□□□□ -0.28
TRIM28-210ENST00000597618 VIL1P09327 827 aaKnown RBP13.28□□□□□ -0.28
TRIM28-210ENST00000597618 TBC1D16Q8TBP0 767 aa13.28□□□□□ -0.28
TRIM28-210ENST00000597618 KCNQ5Q9NR82 932 aa13.28□□□□□ -0.28
TRIM28-210ENST00000597618 PAPPA2Q9BXP8 1791 aa13.27□□□□□ -0.28
TRIM28-210ENST00000597618 ZNF280AP59817 542 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-210ENST00000597618 ANGEL2Q5VTE6 544 aaKnown RBP13.27□□□□□ -0.29
TRIM28-210ENST00000597618 NECTIN2Q92692 538 aa13.27□□□□□ -0.29
TRIM28-210ENST00000597618 GCC1Q96CN9 775 aa13.27□□□□□ -0.29
TRIM28-210ENST00000597618 ZC3H12CQ9C0D7 883 aaKnown RBP13.27□□□□□ -0.29
TRIM28-210ENST00000597618 ASTN2O75129 1339 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-210ENST00000597618 G3V3G9 751 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 SCARF1Q14162 830 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 DCAF8Q5TAQ9 597 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 AGBL3Q8NEM8 1001 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 PLBD2Q8NHP8 589 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 ZNF296Q8WUU4 475 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-210ENST00000597618 FAM89AQ96GI7 184 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 PITPNM2Q9BZ72 1349 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 PODXL2Q9NZ53 605 aa13.26□□□□□ -0.29
TRIM28-210ENST00000597618 MKI67P46013 3256 aaKnown RBP13.26□□□□□ -0.29
TRIM28-210ENST00000597618 TAF1P21675 1872 aa13.25□□□□□ -0.29
TRIM28-210ENST00000597618 RPS8P62241 208 aaKnown RBP13.25□□□□□ -0.29
TRIM28-210ENST00000597618 LMOD3Q0VAK6 560 aa13.25□□□□□ -0.29
TRIM28-210ENST00000597618 NOM1Q5C9Z4 860 aaKnown RBP13.25□□□□□ -0.29
TRIM28-210ENST00000597618 RSBN1LQ6PCB5 846 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-210ENST00000597618 ZNF428Q96B54 188 aa13.25□□□□□ -0.29
TRIM28-210ENST00000597618 ISCA1Q9BUE6 129 aa13.25□□□□□ -0.29
TRIM28-210ENST00000597618 POLR2AP24928 1970 aaKnown RBP13.25□□□□□ -0.29
TRIM28-210ENST00000597618 HTTP42858 3142 aa13.24□□□□□ -0.29
TRIM28-210ENST00000597618 UFL1O94874 794 aa13.24□□□□□ -0.29
TRIM28-210ENST00000597618 TBC1D8O95759 1140 aa13.24□□□□□ -0.29
TRIM28-210ENST00000597618 RIPK4P57078 832 aa13.24□□□□□ -0.29
TRIM28-210ENST00000597618 FBXO46Q6PJ61 603 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-210ENST00000597618 CHPF2Q9P2E5 772 aa13.24□□□□□ -0.29
TRIM28-210ENST00000597618 ANKIB1Q9P2G1 1089 aa13.24□□□□□ -0.29
TRIM28-210ENST00000597618 GGA1Q9UJY5 639 aa13.24□□□□□ -0.29
TRIM28-210ENST00000597618 IRS4O14654 1257 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-210ENST00000597618 USP17L8P0C7I0 530 aa13.23□□□□□ -0.29
TRIM28-210ENST00000597618 HSP90B1P14625 803 aaKnown RBP13.23□□□□□ -0.29
TRIM28-210ENST00000597618 ANKRD13DQ6ZTN6 518 aa13.23□□□□□ -0.29
TRIM28-210ENST00000597618 MYOZ2Q9NPC6 264 aa13.23□□□□□ -0.29
TRIM28-210ENST00000597618 COL4A1P02462 1669 aa13.23□□□□□ -0.29
TRIM28-210ENST00000597618 SCN9AQ15858 1988 aa13.22□□□□□ -0.29
TRIM28-210ENST00000597618 ATP5J2-PTCD1G3V325 749 aa13.22□□□□□ -0.29
TRIM28-210ENST00000597618 GPR25O00155 361 aa13.22□□□□□ -0.29
TRIM28-210ENST00000597618 SREBF2Q12772 1141 aa13.22□□□□□ -0.29
TRIM28-210ENST00000597618 HDGFL1Q5TGJ6 251 aa13.22□□□□□ -0.29
TRIM28-210ENST00000597618 UBE2Q2LH0YL09 131 aa13.21□□□□□ -0.29
TRIM28-210ENST00000597618 HOXB7P09629 217 aa13.21□□□□□ -0.29
TRIM28-210ENST00000597618 TM4SF4P48230 202 aa13.21□□□□□ -0.29
TRIM28-210ENST00000597618 TRIM28Q13263 835 aaKnown RBP13.21□□□□□ -0.29
TRIM28-210ENST00000597618 TTLL12Q14166 644 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-210ENST00000597618 RTL5Q5HYW3 569 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-210ENST00000597618 MOB2Q70IA6 237 aa13.21□□□□□ -0.29
TRIM28-210ENST00000597618 GMLQ99445 158 aa13.21□□□□□ -0.29
TRIM28-210ENST00000597618 DBF4Q9UBU7 674 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-210ENST00000597618 USP17L3A6NCW0 530 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 USP17L4A6NCW7 530 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 FKTNO75072 461 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 NF2P35240 595 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 KRT24Q2M2I5 525 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 USP17L1Q7RTZ2 530 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 CFHR5Q9BXR6 569 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 CENPFP49454 3210 aa13.2□□□□□ -0.3
TRIM28-210ENST00000597618 XDHP47989 1333 aa13.19□□□□□ -0.3
TRIM28-210ENST00000597618 CHL1O00533 1208 aa13.19□□□□□ -0.3
TRIM28-210ENST00000597618 TMPOP42166 694 aaKnown RBP13.19□□□□□ -0.3
TRIM28-210ENST00000597618 CCDC152Q4G0S7 254 aa13.19□□□□□ -0.3
TRIM28-210ENST00000597618 PODNQ7Z5L7 613 aa13.19□□□□□ -0.3
TRIM28-210ENST00000597618 ZBTB38Q8NAP3 1195 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-210ENST00000597618 SEC31BQ9NQW1 1179 aa13.19□□□□□ -0.3
TRIM28-210ENST00000597618 HYPKQ9NX55 129 aa13.19□□□□□ -0.3
TRIM28-210ENST00000597618 BRCA2P51587 3418 aa13.18□□□□□ -0.3
TRIM28-210ENST00000597618 MKRN3Q13064 507 aaKnown RBP13.18□□□□□ -0.3
TRIM28-210ENST00000597618 HABP4Q5JVS0 413 aaKnown RBP13.18□□□□□ -0.3
TRIM28-210ENST00000597618 OGFOD1Q8N543 542 aa13.18□□□□□ -0.3
TRIM28-210ENST00000597618 ALDH1A1P00352 501 aa13.17□□□□□ -0.3
TRIM28-210ENST00000597618 ATP2B4P23634 1241 aa13.17□□□□□ -0.3
TRIM28-210ENST00000597618 GOLGA2Q08379 1002 aa13.17□□□□□ -0.3
TRIM28-210ENST00000597618 NBPF9Q3BBW0 867 aa13.17□□□□□ -0.3
TRIM28-210ENST00000597618 PRAMEF18Q5VWM3 479 aa13.17□□□□□ -0.3
TRIM28-210ENST00000597618 ARMC9Q7Z3E5 817 aa13.17□□□□□ -0.3
TRIM28-210ENST00000597618 SCAF8Q9UPN6 1271 aaKnown RBP13.17□□□□□ -0.3
TRIM28-210ENST00000597618 PSME4Q14997 1843 aa13.17□□□□□ -0.3
TRIM28-210ENST00000597618 MYO3BQ8WXR4 1341 aa13.16□□□□□ -0.3
TRIM28-210ENST00000597618 MMP14P50281 582 aa13.16□□□□□ -0.3
TRIM28-210ENST00000597618 INTS3Q68E01 1043 aaKnown RBP13.16□□□□□ -0.3
TRIM28-210ENST00000597618 ANKRD18AQ8IVF6 992 aa13.16□□□□□ -0.3
TRIM28-210ENST00000597618 LAS1LQ9Y4W2 734 aaKnown RBP13.16□□□□□ -0.3
TRIM28-210ENST00000597618 MED23Q9ULK4 1368 aa13.16□□□□□ -0.3
TRIM28-210ENST00000597618 WNT10BO00744 389 aa13.15□□□□□ -0.3
TRIM28-210ENST00000597618 PDE8AO60658 829 aa13.15□□□□□ -0.3
TRIM28-210ENST00000597618 PCCAP05165 728 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-210ENST00000597618 PTPN12Q05209 780 aaKnown RBP13.15□□□□□ -0.3
TRIM28-210ENST00000597618 RIC3Q7Z5B4 369 aa13.15□□□□□ -0.3
TRIM28-210ENST00000597618 APOBEC3FQ8IUX4 373 aaKnown RBP13.15□□□□□ -0.3
TRIM28-210ENST00000597618 NEUROD2Q15784 382 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms