RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ABCC4O15439 1325 aa11.95□□□□□ -0.5
TRIM28-208ENST00000597172 USP48Q86UV5 1035 aa11.95□□□□□ -0.5
TRIM28-208ENST00000597172 REM2Q8IYK8 340 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-208ENST00000597172 LARGE2Q8N3Y3 721 aa11.95□□□□□ -0.5
TRIM28-208ENST00000597172 TMEM57Q8N5G2 664 aa11.95□□□□□ -0.5
TRIM28-208ENST00000597172 OTUD5Q96G74 571 aa11.95□□□□□ -0.5
TRIM28-208ENST00000597172 CRBNQ96SW2 442 aa11.95□□□□□ -0.5
TRIM28-208ENST00000597172 MS4A1P11836 297 aa11.94□□□□□ -0.5
TRIM28-208ENST00000597172 INTS3Q68E01 1043 aaKnown RBP11.94□□□□□ -0.5
TRIM28-208ENST00000597172 C2orf69Q8N8R5 385 aa11.94□□□□□ -0.5
TRIM28-208ENST00000597172 PLBD2Q8NHP8 589 aa11.94□□□□□ -0.5
TRIM28-208ENST00000597172 EXOC6Q8TAG9 804 aa11.94□□□□□ -0.5
TRIM28-208ENST00000597172 DNAAF4Q8WXU2 420 aa11.94□□□□□ -0.5
TRIM28-208ENST00000597172 GBA2Q9HCG7 927 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-208ENST00000597172 MAP3K2Q9Y2U5 619 aa11.94□□□□□ -0.5
TRIM28-208ENST00000597172 COG6Q9Y2V7 657 aa11.94□□□□□ -0.5
TRIM28-208ENST00000597172 BRCA2P51587 3418 aa11.93□□□□□ -0.5
TRIM28-208ENST00000597172 BCORQ6W2J9 1755 aa11.93□□□□□ -0.5
TRIM28-208ENST00000597172 CACNA1FO60840 1977 aa11.93□□□□□ -0.5
TRIM28-208ENST00000597172 DDX58O95786 925 aaKnown RBP11.93□□□□□ -0.5
TRIM28-208ENST00000597172 SLC4A10Q6U841 1118 aa11.93□□□□□ -0.5
TRIM28-208ENST00000597172 RIC3Q7Z5B4 369 aa11.93□□□□□ -0.5
TRIM28-208ENST00000597172 FTSJ3Q8IY81 847 aaKnown RBP11.93□□□□□ -0.5
TRIM28-208ENST00000597172 TBC1D2BQ9UPU7 963 aa11.93□□□□□ -0.5
TRIM28-208ENST00000597172 ZNF330Q9Y3S2 320 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-208ENST00000597172 TTC28Q96AY4 2481 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 COL4A5P29400 1685 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 H0YGN5 161 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 TBC1D8O95759 1140 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 SLC10A3P09131 477 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 ALDH1B1P30837 517 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 HIRAP54198 1017 aaPredicted RBP11.92□□□□□ -0.5
TRIM28-208ENST00000597172 MVPQ14764 893 aaKnown RBP11.92□□□□□ -0.5
TRIM28-208ENST00000597172 HLFQ16534 295 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 BEND3Q5T5X7 828 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 DLK2Q6UY11 383 aa11.92□□□□□ -0.5
TRIM28-208ENST00000597172 METTL22Q9BUU2 404 aaPredicted RBP11.92□□□□□ -0.5
TRIM28-208ENST00000597172 MAP3K15Q6ZN16 1313 aa11.91□□□□□ -0.5
TRIM28-208ENST00000597172 KLRG2A4D1S0 409 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-208ENST00000597172 ERVV-1B6SEH8 477 aa11.91□□□□□ -0.5
TRIM28-208ENST00000597172 ZBTB7BO15156 539 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-208ENST00000597172 CAMTA2O94983 1202 aa11.91□□□□□ -0.5
TRIM28-208ENST00000597172 IGKV5-2P06315 115 aa11.91□□□□□ -0.5
TRIM28-208ENST00000597172 EN2P19622 333 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-208ENST00000597172 CHRDL2Q6WN34 429 aa11.91□□□□□ -0.5
TRIM28-208ENST00000597172 DZIP3Q86Y13 1208 aaKnown RBP11.91□□□□□ -0.5
TRIM28-208ENST00000597172 NIM1KQ8IY84 436 aa11.91□□□□□ -0.5
TRIM28-208ENST00000597172 ZBTB3Q9H5J0 574 aa11.91□□□□□ -0.5
TRIM28-208ENST00000597172 GPR25O00155 361 aa11.9□□□□□ -0.5
TRIM28-208ENST00000597172 NEFLP07196 543 aa11.9□□□□□ -0.5
TRIM28-208ENST00000597172 GMPSP49915 693 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-208ENST00000597172 CCT4P50991 539 aaKnown RBP11.9□□□□□ -0.5
TRIM28-208ENST00000597172 CC2D2BQ6DHV5 1058 aa11.9□□□□□ -0.5
TRIM28-208ENST00000597172 KIF6Q6ZMV9 814 aa11.9□□□□□ -0.5
TRIM28-208ENST00000597172 ITPRIPQ8IWB1 547 aa11.9□□□□□ -0.5
TRIM28-208ENST00000597172 MYD88Q99836 296 aa11.9□□□□□ -0.5
TRIM28-208ENST00000597172 POLR2AP24928 1970 aaKnown RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 ATP5J2-PTCD1G3V325 749 aa11.89□□□□□ -0.51
TRIM28-208ENST00000597172 TCIRG1Q13488 830 aa11.89□□□□□ -0.51
TRIM28-208ENST00000597172 CWF19L2Q2TBE0 894 aaKnown RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 NOM1Q5C9Z4 860 aaKnown RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 GIGYF2Q6Y7W6 1299 aaKnown RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 NPM2Q86SE8 214 aaKnown RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 NBPF5PQ86XG9 351 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 LINS1Q8NG48 757 aa11.89□□□□□ -0.51
TRIM28-208ENST00000597172 TRPM4Q8TD43 1214 aa11.89□□□□□ -0.51
TRIM28-208ENST00000597172 ISCA1Q9BUE6 129 aa11.89□□□□□ -0.51
TRIM28-208ENST00000597172 COL25A1Q9BXS0 654 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 SRCIN1Q9C0H9 1055 aa11.89□□□□□ -0.51
TRIM28-208ENST00000597172 RBM27Q9P2N5 1060 aaKnown RBP11.89□□□□□ -0.51
TRIM28-208ENST00000597172 GTF3C3Q9Y5Q9 886 aa11.89□□□□□ -0.51
TRIM28-208ENST00000597172 FKTNO75072 461 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 ALDH1L1O75891 902 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 CXCL9Q07325 125 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 KRT26Q7Z3Y9 468 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 USP44Q9H0E7 712 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 ZBTB40Q9NUA8 1239 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 DDX19BQ9UMR2 479 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 CENPFP49454 3210 aa11.88□□□□□ -0.51
TRIM28-208ENST00000597172 SNED1Q8TER0 1413 aa11.87□□□□□ -0.51
TRIM28-208ENST00000597172 NEURL1BA8MQ27 555 aa11.87□□□□□ -0.51
TRIM28-208ENST00000597172 TRIM28Q13263 835 aaKnown RBP11.87□□□□□ -0.51
TRIM28-208ENST00000597172 ERICH6BQ5W0A0 696 aa11.87□□□□□ -0.51
TRIM28-208ENST00000597172 ZNF34Q8IZ26 560 aa11.87□□□□□ -0.51
TRIM28-208ENST00000597172 MEIS3Q99687 375 aa11.87□□□□□ -0.51
TRIM28-208ENST00000597172 PAPPA2Q9BXP8 1791 aa11.87□□□□□ -0.51
TRIM28-208ENST00000597172 HTTP42858 3142 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 RGL2O15211 777 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 NEXNQ0ZGT2 675 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 GCKRQ14397 625 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 GRIPAP1Q4V328 841 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 CLEC4GQ6UXB4 293 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 RASAL3Q86YV0 1011 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 CDHR2Q9BYE9 1310 aa11.86□□□□□ -0.51
TRIM28-208ENST00000597172 UNC80Q8N2C7 3258 aa11.85□□□□□ -0.51
TRIM28-208ENST00000597172 IBTKQ9P2D0 1353 aaPredicted RBP11.85□□□□□ -0.51
TRIM28-208ENST00000597172 PPIP5K2O43314 1243 aa11.85□□□□□ -0.51
TRIM28-208ENST00000597172 HSP90AB3PQ58FF7 597 aa11.85□□□□□ -0.51
TRIM28-208ENST00000597172 TPTE2Q6XPS3 522 aa11.85□□□□□ -0.51
TRIM28-208ENST00000597172 CCDC191Q8NCU4 936 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms