RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CREBZFQ9NS37 354 aa16.68■□□□□ 0.26
LIG1-212ENST00000596549 SHTN1A0MZ66 631 aa16.67■□□□□ 0.26
LIG1-212ENST00000596549 C6orf229H3BNL8 230 aa16.67■□□□□ 0.26
LIG1-212ENST00000596549 ECE2O60344 883 aa16.67■□□□□ 0.26
LIG1-212ENST00000596549 ANKRD18AQ8IVF6 992 aa16.67■□□□□ 0.26
LIG1-212ENST00000596549 PLA2G12BQ9BX93 195 aa16.67■□□□□ 0.26
LIG1-212ENST00000596549 CLEC11AQ9Y240 323 aa16.67■□□□□ 0.26
LIG1-212ENST00000596549 ZNF609O15014 1411 aa16.66■□□□□ 0.26
LIG1-212ENST00000596549 UFL1O94874 794 aa16.66■□□□□ 0.26
LIG1-212ENST00000596549 FAM161AQ3B820 660 aa16.66■□□□□ 0.26
LIG1-212ENST00000596549 BEND3Q5T5X7 828 aa16.66■□□□□ 0.26
LIG1-212ENST00000596549 ADARB2Q9NS39 739 aaKnown RBP16.66■□□□□ 0.26
LIG1-212ENST00000596549 XDHP47989 1333 aa16.66■□□□□ 0.26
LIG1-212ENST00000596549 PSMD14O00487 310 aa16.65■□□□□ 0.26
LIG1-212ENST00000596549 FMR1Q06787 632 aaKnown RBP eCLIP16.65■□□□□ 0.26
LIG1-212ENST00000596549 DOK7Q18PE1 504 aa16.65■□□□□ 0.26
LIG1-212ENST00000596549 USP50Q70EL3 339 aaPredicted RBP16.65■□□□□ 0.26
LIG1-212ENST00000596549 CNTROBQ8N137 903 aa16.65■□□□□ 0.26
LIG1-212ENST00000596549 CDC5LQ99459 802 aaKnown RBP16.65■□□□□ 0.26
LIG1-212ENST00000596549 EYA3Q99504 573 aa16.65■□□□□ 0.26
LIG1-212ENST00000596549 KCNQ5Q9NR82 932 aa16.65■□□□□ 0.26
LIG1-212ENST00000596549 ZBTB12Q9Y330 459 aaPredicted RBP16.65■□□□□ 0.26
LIG1-212ENST00000596549 POLR2AP24928 1970 aaKnown RBP16.65■□□□□ 0.26
LIG1-212ENST00000596549 CNTNAP1P78357 1384 aa16.64■□□□□ 0.26
LIG1-212ENST00000596549 PCNTO95613 3336 aa16.64■□□□□ 0.25
LIG1-212ENST00000596549 WTIPA6NIX2 430 aaPredicted RBP16.64■□□□□ 0.25
LIG1-212ENST00000596549 TRPM4Q8TD43 1214 aa16.64■□□□□ 0.25
LIG1-212ENST00000596549 ANKIB1Q9P2G1 1089 aa16.64■□□□□ 0.25
LIG1-212ENST00000596549 GGA1Q9UJY5 639 aa16.64■□□□□ 0.25
LIG1-212ENST00000596549 MED23Q9ULK4 1368 aa16.64■□□□□ 0.25
LIG1-212ENST00000596549 ARAP2Q8WZ64 1704 aa16.63■□□□□ 0.25
LIG1-212ENST00000596549 TNIP1Q15025 636 aa16.63■□□□□ 0.25
LIG1-212ENST00000596549 MKRN1Q9UHC7 482 aaKnown RBP16.63■□□□□ 0.25
LIG1-212ENST00000596549 TMEM88BA6NKF7 163 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 E9PSI1 815 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 CSF1RP07333 972 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 ITGA6P23229 1130 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 HIRAP54198 1017 aaPredicted RBP16.62■□□□□ 0.25
LIG1-212ENST00000596549 SLFN5Q08AF3 891 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 MICALL2Q8IY33 904 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 BCL2L13Q9BXK5 485 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 BSDC1Q9NW68 430 aaPredicted RBP16.62■□□□□ 0.25
LIG1-212ENST00000596549 MINPP1Q9UNW1 487 aa16.62■□□□□ 0.25
LIG1-212ENST00000596549 CCER2I3L3R5 266 aa16.61■□□□□ 0.25
LIG1-212ENST00000596549 TRAF5O00463 557 aa16.61■□□□□ 0.25
LIG1-212ENST00000596549 EGFRP00533 1210 aa16.61■□□□□ 0.25
LIG1-212ENST00000596549 FOXO4P98177 505 aa16.61■□□□□ 0.25
LIG1-212ENST00000596549 CDCA7LQ96GN5 454 aa16.61■□□□□ 0.25
LIG1-212ENST00000596549 ZC3H12CQ9C0D7 883 aaKnown RBP16.61■□□□□ 0.25
LIG1-212ENST00000596549 ECM29Q5VYK3 1845 aa16.61■□□□□ 0.25
LIG1-212ENST00000596549 ATP2B4P23634 1241 aa16.6■□□□□ 0.25
LIG1-212ENST00000596549 EPHA10Q5JZY3 1008 aa16.6■□□□□ 0.25
LIG1-212ENST00000596549 MRPL50Q8N5N7 158 aaKnown RBP16.6■□□□□ 0.25
LIG1-212ENST00000596549 CNOT7Q9UIV1 285 aaKnown RBP16.6■□□□□ 0.25
LIG1-212ENST00000596549 GRM8O00222 908 aa16.59■□□□□ 0.25
LIG1-212ENST00000596549 CCT4P50991 539 aaKnown RBP16.59■□□□□ 0.25
LIG1-212ENST00000596549 DPF2Q92785 391 aa16.59■□□□□ 0.25
LIG1-212ENST00000596549 PGAP2Q9UHJ9 254 aa16.59■□□□□ 0.25
LIG1-212ENST00000596549 VIL1P09327 827 aaKnown RBP16.58■□□□□ 0.24
LIG1-212ENST00000596549 RPS12P25398 132 aaKnown RBP16.58■□□□□ 0.24
LIG1-212ENST00000596549 KLRK1P26718 216 aa16.58■□□□□ 0.24
LIG1-212ENST00000596549 IGHMBP2P38935 993 aaKnown RBP16.58■□□□□ 0.24
LIG1-212ENST00000596549 SLC4A10Q6U841 1118 aa16.58■□□□□ 0.24
LIG1-212ENST00000596549 SAMD7Q7Z3H4 446 aa16.58■□□□□ 0.24
LIG1-212ENST00000596549 TXNRD3Q86VQ6 643 aa16.58■□□□□ 0.24
LIG1-212ENST00000596549 GLIS2Q9BZE0 524 aaPredicted RBP16.58■□□□□ 0.24
LIG1-212ENST00000596549 IRS2Q9Y4H2 1338 aa16.57■□□□□ 0.24
LIG1-212ENST00000596549 RASSF10A6NK89 507 aa16.57■□□□□ 0.24
LIG1-212ENST00000596549 ALDH1L1O75891 902 aa16.57■□□□□ 0.24
LIG1-212ENST00000596549 HSPA1AP0DMV8 641 aaKnown RBP16.57■□□□□ 0.24
LIG1-212ENST00000596549 HSPA1BP0DMV9 641 aaKnown RBP16.57■□□□□ 0.24
LIG1-212ENST00000596549 TRMT2AQ8IZ69 625 aaKnown RBP16.57■□□□□ 0.24
LIG1-212ENST00000596549 SSH1Q8WYL5 1049 aa16.57■□□□□ 0.24
LIG1-212ENST00000596549 SRCIN1Q9C0H9 1055 aa16.57■□□□□ 0.24
LIG1-212ENST00000596549 ANKRD18BA2A2Z9 1011 aa16.56■□□□□ 0.24
LIG1-212ENST00000596549 TBC1D10BQ4KMP7 808 aaPredicted RBP16.56■□□□□ 0.24
LIG1-212ENST00000596549 CST9Q5W186 159 aa16.56■□□□□ 0.24
LIG1-212ENST00000596549 KAZALD1Q96I82 304 aa16.56■□□□□ 0.24
LIG1-212ENST00000596549 SUCLG2Q96I99 432 aa16.56■□□□□ 0.24
LIG1-212ENST00000596549 ZNF804BA4D1E1 1349 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 UTYO14607 1347 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 PTPRCP08575 1304 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 H7C1D1 291 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 VEGFBP49765 207 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 CHRNDQ07001 517 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 RSBN1LQ6PCB5 846 aaPredicted RBP16.55■□□□□ 0.24
LIG1-212ENST00000596549 LMBR1LQ6UX01 489 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 ZC3H15Q8WU90 426 aaKnown RBP16.55■□□□□ 0.24
LIG1-212ENST00000596549 MPHOSPH8Q99549 860 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 MYH13Q9UKX3 1938 aa16.55■□□□□ 0.24
LIG1-212ENST00000596549 ASTN2O75129 1339 aaPredicted RBP16.54■□□□□ 0.24
LIG1-212ENST00000596549 G3V3G9 751 aa16.54■□□□□ 0.24
LIG1-212ENST00000596549 NBPF7P0C2Y1 421 aaPredicted RBP16.54■□□□□ 0.24
LIG1-212ENST00000596549 KIF4BQ2VIQ3 1234 aa16.54■□□□□ 0.24
LIG1-212ENST00000596549 DCAF8Q5TAQ9 597 aa16.54■□□□□ 0.24
LIG1-212ENST00000596549 PODNQ7Z5L7 613 aa16.54■□□□□ 0.24
LIG1-212ENST00000596549 GMLQ99445 158 aa16.54■□□□□ 0.24
LIG1-212ENST00000596549 ABT1Q9ULW3 272 aaKnown RBP16.54■□□□□ 0.24
LIG1-212ENST00000596549 LEMD3Q9Y2U8 911 aa16.54■□□□□ 0.24
LIG1-212ENST00000596549 CHMP3Q9Y3E7 222 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms