RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 PNMA8AQ86V59 439 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-210ENST00000595874 MYH16Q9H6N6 1097 aa13.16□□□□□ -0.3
SHKBP1-210ENST00000595874 GPRC5DQ9NZD1 345 aa13.16□□□□□ -0.3
SHKBP1-210ENST00000595874 ABT1Q9ULW3 272 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-210ENST00000595874 PASKQ96RG2 1323 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 HSPA1AP0DMV8 641 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 HSPA1BP0DMV9 641 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 GCKRQ14397 625 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 FAM161AQ3B820 660 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 TBC1D10BQ4KMP7 808 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 SAMD7Q7Z3H4 446 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 MICALL2Q8IY33 904 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 TTLL11Q8NHH1 800 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 EYA3Q99504 573 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 GLIS2Q9BZE0 524 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 ZC3H12CQ9C0D7 883 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 CNOT7Q9UIV1 285 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 GGA1Q9UJY5 639 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 MYH3P11055 1940 aa13.15□□□□□ -0.3
SHKBP1-210ENST00000595874 CDHR2Q9BYE9 1310 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 TMEM88BA6NKF7 163 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 H7C1W4 665 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 EGFRP00533 1210 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 HIRAP54198 1017 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 TNIP1Q15025 636 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 TMC4Q7Z404 712 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 CDCA7LQ96GN5 454 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 CHMP4AQ9BY43 222 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 CREBZFQ9NS37 354 aa13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 ADARB2Q9NS39 739 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-210ENST00000595874 RTL9Q8NET4 1388 aa13.13□□□□□ -0.31
SHKBP1-210ENST00000595874 SNAP23O00161 211 aa13.13□□□□□ -0.31
SHKBP1-210ENST00000595874 MXD3Q9BW11 206 aa13.13□□□□□ -0.31
SHKBP1-210ENST00000595874 SCAF8Q9UPN6 1271 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-210ENST00000595874 SCN9AQ15858 1988 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 PLIN1O60240 522 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 HSP90B1P14625 803 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 ITGA6P23229 1130 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 KLRK1P26718 216 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 VEGFBP49765 207 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 USP50Q70EL3 339 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 JMYQ8N9B5 988 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 HELBQ8NG08 1087 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 ZNF594Q96JF6 807 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 CDC5LQ99459 802 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 VPS33BQ9H267 617 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 MINPP1Q9UNW1 487 aa13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 ASTN2O75129 1339 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-210ENST00000595874 H7C1D1 291 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 CAPN15O75808 1086 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 IGHMBP2P38935 993 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 CASP7P55210 303 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 EPHA10Q5JZY3 1008 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 BEND3Q5T5X7 828 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 COL13A1Q5TAT6 717 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 USP48Q86UV5 1035 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 LINS1Q8NG48 757 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 XDHP47989 1333 aa13.11□□□□□ -0.31
SHKBP1-210ENST00000595874 CNTNAP1P78357 1384 aa13.1□□□□□ -0.31
SHKBP1-210ENST00000595874 TAF5LO75529 589 aa13.1□□□□□ -0.31
SHKBP1-210ENST00000595874 CELF2O95319 508 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-210ENST00000595874 DEFB115Q30KQ5 88 aa13.1□□□□□ -0.31
SHKBP1-210ENST00000595874 CYP4F22Q6NT55 531 aa13.1□□□□□ -0.31
SHKBP1-210ENST00000595874 TXNRD3Q86VQ6 643 aa13.1□□□□□ -0.31
SHKBP1-210ENST00000595874 ZNF521Q96K83 1311 aa13.1□□□□□ -0.31
SHKBP1-210ENST00000595874 ADM5C9JUS6 153 aa13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 ATP2B4P23634 1241 aa13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 CCT4P50991 539 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 NCBP3Q53F19 620 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 CST9Q5W186 159 aa13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 LMBR1LQ6UX01 489 aa13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 MRPL50Q8N5N7 158 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 MPHOSPH8Q99549 860 aa13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 PODXL2Q9NZ53 605 aa13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 C9orf78Q9NZ63 289 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 JAG2Q9Y219 1238 aa13.09□□□□□ -0.31
SHKBP1-210ENST00000595874 ANKRD18BA2A2Z9 1011 aa13.08□□□□□ -0.32
SHKBP1-210ENST00000595874 KCNJ4P48050 445 aa13.08□□□□□ -0.32
SHKBP1-210ENST00000595874 FOXO4P98177 505 aa13.08□□□□□ -0.32
SHKBP1-210ENST00000595874 TAF7LQ5H9L4 462 aa13.08□□□□□ -0.32
SHKBP1-210ENST00000595874 SUCLG2Q96I99 432 aa13.08□□□□□ -0.32
SHKBP1-210ENST00000595874 BSDC1Q9NW68 430 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-210ENST00000595874 TRPM7Q96QT4 1865 aa13.08□□□□□ -0.32
SHKBP1-210ENST00000595874 AOC2O75106 756 aa13.07□□□□□ -0.32
SHKBP1-210ENST00000595874 CHRNDQ07001 517 aa13.07□□□□□ -0.32
SHKBP1-210ENST00000595874 KIF4BQ2VIQ3 1234 aa13.07□□□□□ -0.32
SHKBP1-210ENST00000595874 SSH1Q8WYL5 1049 aa13.07□□□□□ -0.32
SHKBP1-210ENST00000595874 SRCIN1Q9C0H9 1055 aa13.07□□□□□ -0.32
SHKBP1-210ENST00000595874 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-210ENST00000595874 CACNA1FO60840 1977 aa13.07□□□□□ -0.32
SHKBP1-210ENST00000595874 GRM8O00222 908 aa13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 FOXN1O15353 648 aa13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 CSF1RP07333 972 aa13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 SLFN5Q08AF3 891 aa13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 IFIT5Q13325 482 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 GGA3Q9NZ52 723 aa13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 TSKSQ9UJT2 592 aa13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 POLR2AP24928 1970 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 ZNF804BA4D1E1 1349 aa13.06□□□□□ -0.32
SHKBP1-210ENST00000595874 WDR33Q9C0J8 1336 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms