RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ZSCAN31Q96LW9 406 aaPredicted RBP11.61□□□□□ -0.55
LIG3-216ENST00000593099 CPDO75976 1380 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 MROH5Q6ZUA9 1318 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 PRAMEF22A3QJZ6 481 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 NIM1KQ8IY84 436 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 VEZTQ9HBM0 779 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 ATF5Q9Y2D1 282 aaPredicted RBP11.6□□□□□ -0.55
LIG3-216ENST00000593099 LPIN2Q92539 896 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 ATP2B1P20020 1258 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 TIMM10P62072 90 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 BEND3Q5T5X7 828 aa11.6□□□□□ -0.55
LIG3-216ENST00000593099 EN1Q05925 392 aaPredicted RBP11.6□□□□□ -0.55
LIG3-216ENST00000593099 C3P01024 1663 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 DDX11L8A8MPP1 907 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 CLEC4GQ6UXB4 293 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 MARCH10Q8NA82 808 aaPredicted RBP11.59□□□□□ -0.55
LIG3-216ENST00000593099 KLHDC4Q8TBB5 520 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 PPIP5K2O43314 1243 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 CASTP20810 708 aaKnown RBP11.59□□□□□ -0.55
LIG3-216ENST00000593099 CTCFLQ8NI51 663 aaPredicted RBP11.59□□□□□ -0.55
LIG3-216ENST00000593099 BICD2Q8TD16 824 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 CCDC196A0A1B0GTZ2 297 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 CCDC96Q2M329 555 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 DRC7Q8IY82 874 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 WDR66Q8TBY9 1149 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 USP44Q9H0E7 712 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 SRP68Q9UHB9 627 aaKnown RBP11.59□□□□□ -0.55
LIG3-216ENST00000593099 SLC4A4Q9Y6R1 1079 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 TAF5LO75529 589 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 MMP10P09238 476 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 BACH2Q9BYV9 841 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 JAG2Q9Y219 1238 aa11.59□□□□□ -0.55
LIG3-216ENST00000593099 MAGEB6P1A0A0J9YX57 407 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 TSPY2A6NKD2 308 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 TNNI3KQ59H18 835 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 FPGT-TNNI3KV9GXZ4 949 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 MROH2AA6NES4 1674 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 PPLO60437 1756 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 IFIT3O14879 490 aaKnown RBP11.58□□□□□ -0.56
LIG3-216ENST00000593099 TNNI2P48788 182 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 MFSD6Q6ZSS7 791 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 GZF1Q9H116 711 aaPredicted RBP11.58□□□□□ -0.56
LIG3-216ENST00000593099 HOOK1Q9UJC3 728 aaKnown RBP11.58□□□□□ -0.56
LIG3-216ENST00000593099 MAST3O60307 1309 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 PICALMQ13492 652 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 NARFQ9UHQ1 456 aa11.58□□□□□ -0.56
LIG3-216ENST00000593099 ATP2B4P23634 1241 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 TMC4Q7Z404 712 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 WASF1Q92558 559 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 XAGE2Q96GT9 111 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 LRRC7Q96NW7 1537 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 MCMDC2Q4G0Z9 681 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 ARHGAP27Q6ZUM4 889 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 SMC5Q8IY18 1101 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 GNAT2P19087 354 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 PPP4R3BQ5MIZ7 849 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 L1TD1Q5T7N2 865 aaKnown RBP11.57□□□□□ -0.56
LIG3-216ENST00000593099 ABCC4O15439 1325 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 RNF113AO15541 343 aaKnown RBP11.57□□□□□ -0.56
LIG3-216ENST00000593099 NLRP10Q86W26 655 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 DBNDD2Q9BQY9 259 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 SEC63Q9UGP8 760 aaKnown RBP11.57□□□□□ -0.56
LIG3-216ENST00000593099 DDX49Q9Y6V7 483 aaKnown RBP11.57□□□□□ -0.56
LIG3-216ENST00000593099 IQGAP1P46940 1657 aa11.57□□□□□ -0.56
LIG3-216ENST00000593099 SDSP20132 328 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 HAND2P61296 217 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 CREBRFQ8IUR6 639 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 MAGEB6Q8N7X4 407 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 CCDC73Q6ZRK6 1079 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 TBC1D22AQ8WUA7 517 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 TPD52L1Q16890 204 aaPredicted RBP11.56□□□□□ -0.56
LIG3-216ENST00000593099 UPF3BQ9BZI7 483 aaKnown RBP11.56□□□□□ -0.56
LIG3-216ENST00000593099 HMG20BQ9P0W2 317 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 BBOX1O75936 387 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 CYP19A1P11511 503 aaPredicted RBP11.56□□□□□ -0.56
LIG3-216ENST00000593099 CATIPQ7Z7H3 387 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 SLC12A7Q9Y666 1083 aa11.56□□□□□ -0.56
LIG3-216ENST00000593099 PNMA6EA0A0J9YXQ4 647 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 SLC4A8Q2Y0W8 1093 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 TBC1D9Q6ZT07 1266 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 PIBF1Q8WXW3 757 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 CCDC178Q5BJE1 867 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 DPY19L2Q6NUT2 758 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 WDR78Q5VTH9 848 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 NCOA7Q8NI08 942 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 ARID3AQ99856 593 aa11.55□□□□□ -0.56
LIG3-216ENST00000593099 SSFA2P28290 1259 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 ERFEQ4G0M1 354 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 MIGA1Q8NAN2 632 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 ZNF396Q96N95 335 aaPredicted RBP11.54□□□□□ -0.56
LIG3-216ENST00000593099 NOL7Q9UMY1 257 aaKnown RBP11.54□□□□□ -0.56
LIG3-216ENST00000593099 TTC6Q86TZ1 520 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 SKAP1Q86WV1 359 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 TRMT2AQ8IZ69 625 aaKnown RBP11.54□□□□□ -0.56
LIG3-216ENST00000593099 ESR2Q92731 530 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 KAT14Q9H8E8 782 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 MCM9Q9NXL9 1143 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 STX8Q9UNK0 236 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 ZNF521Q96K83 1311 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms