RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 TIAM2Q8IVF5 1701 aa12.06□□□□□ -0.48
DDX39A-220ENST00000593008 NEFLP07196 543 aa12.06□□□□□ -0.48
DDX39A-220ENST00000593008 RFX5P48382 616 aaPredicted RBP12.06□□□□□ -0.48
DDX39A-220ENST00000593008 RABL6Q3YEC7 729 aaPredicted RBP12.06□□□□□ -0.48
DDX39A-220ENST00000593008 DPY19L2Q6NUT2 758 aa12.06□□□□□ -0.48
DDX39A-220ENST00000593008 DPP8Q6V1X1 898 aaPredicted RBP12.06□□□□□ -0.48
DDX39A-220ENST00000593008 SP8Q8IXZ3 490 aa12.06□□□□□ -0.48
DDX39A-220ENST00000593008 C16orf71Q8IYS4 520 aaPredicted RBP12.06□□□□□ -0.48
DDX39A-220ENST00000593008 ZNF541Q9H0D2 1346 aa12.06□□□□□ -0.48
DDX39A-220ENST00000593008 SRGAP3O43295 1099 aa12.05□□□□□ -0.48
DDX39A-220ENST00000593008 CSF1RP07333 972 aa12.05□□□□□ -0.48
DDX39A-220ENST00000593008 HSP90B1P14625 803 aaKnown RBP12.05□□□□□ -0.48
DDX39A-220ENST00000593008 AOC3Q16853 763 aa12.05□□□□□ -0.48
DDX39A-220ENST00000593008 CCDC152Q4G0S7 254 aa12.05□□□□□ -0.48
DDX39A-220ENST00000593008 LARGE2Q8N3Y3 721 aa12.05□□□□□ -0.48
DDX39A-220ENST00000593008 MPNDQ8N594 471 aa12.05□□□□□ -0.48
DDX39A-220ENST00000593008 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.05□□□□□ -0.48
DDX39A-220ENST00000593008 CCDC88AQ3V6T2 1871 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 POTECB2RU33 542 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 PPIP5K2O43314 1243 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 TOMM70O94826 608 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 ITGA6P23229 1130 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 RPS8P62241 208 aaKnown RBP12.04□□□□□ -0.48
DDX39A-220ENST00000593008 GRIPAP1Q4V328 841 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 JDP2Q8WYK2 163 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 PUS3Q9BZE2 481 aaKnown RBP12.04□□□□□ -0.48
DDX39A-220ENST00000593008 SIL1Q9H173 461 aa12.04□□□□□ -0.48
DDX39A-220ENST00000593008 COL4A5P29400 1685 aa12.03□□□□□ -0.48
DDX39A-220ENST00000593008 FZD9O00144 591 aa12.03□□□□□ -0.48
DDX39A-220ENST00000593008 IGHDP01880 384 aa12.03□□□□□ -0.48
DDX39A-220ENST00000593008 VEGFAP15692 232 aaPredicted RBP12.03□□□□□ -0.48
DDX39A-220ENST00000593008 GPSM2P81274 684 aa12.03□□□□□ -0.48
DDX39A-220ENST00000593008 POLA2Q14181 598 aa12.03□□□□□ -0.48
DDX39A-220ENST00000593008 B4GALNT3Q6L9W6 998 aa12.03□□□□□ -0.48
DDX39A-220ENST00000593008 SKAP1Q86WV1 359 aa12.03□□□□□ -0.48
DDX39A-220ENST00000593008 NSFL1CQ9UNZ2 370 aaKnown RBP12.03□□□□□ -0.48
DDX39A-220ENST00000593008 WTIPA6NIX2 430 aaPredicted RBP12.02□□□□□ -0.49
DDX39A-220ENST00000593008 ATP8B2P98198 1209 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 MTX1Q13505 466 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 LRRC24Q50LG9 513 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 TMC4Q7Z404 712 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 NIM1KQ8IY84 436 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 SUPT20HQ8NEM7 779 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 GPR101Q96P66 508 aaPredicted RBP12.02□□□□□ -0.49
DDX39A-220ENST00000593008 RTFDC1Q9BY42 306 aaPredicted RBP12.02□□□□□ -0.49
DDX39A-220ENST00000593008 EXOC6BQ9Y2D4 811 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 GJA3Q9Y6H8 435 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 RTL9Q8NET4 1388 aa12.02□□□□□ -0.49
DDX39A-220ENST00000593008 A0A1B0GUL6 1792 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 C6orf229H3BNL8 230 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 APBB1O00213 710 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 RIMBP2O15034 1052 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 EIF6P56537 245 aaKnown RBP12.01□□□□□ -0.49
DDX39A-220ENST00000593008 PTPN12Q05209 780 aaKnown RBP12.01□□□□□ -0.49
DDX39A-220ENST00000593008 ANKRD18AQ8IVF6 992 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 SSH3Q8TE77 659 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 BCL11AQ9H165 835 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 ANKIB1Q9P2G1 1089 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 POLLQ9UGP5 575 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 GTF3C3Q9Y5Q9 886 aa12.01□□□□□ -0.49
DDX39A-220ENST00000593008 LRRC37AA6NMS7 1700 aa12□□□□□ -0.49
DDX39A-220ENST00000593008 CEP350Q5VT06 3117 aa12□□□□□ -0.49
DDX39A-220ENST00000593008 SNAP23O00161 211 aa12□□□□□ -0.49
DDX39A-220ENST00000593008 KIAA2012Q0VF49 1180 aa12□□□□□ -0.49
DDX39A-220ENST00000593008 IFIT5Q13325 482 aaKnown RBP12□□□□□ -0.49
DDX39A-220ENST00000593008 RBM46Q8TBY0 533 aaKnown RBP12□□□□□ -0.49
DDX39A-220ENST00000593008 CDC5LQ99459 802 aaKnown RBP12□□□□□ -0.49
DDX39A-220ENST00000593008 DICER1Q9UPY3 1922 aaKnown RBP11.99□□□□□ -0.49
DDX39A-220ENST00000593008 ANKRD18BA2A2Z9 1011 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 RAD17O75943 681 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 UFL1O94874 794 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 POTEIP0CG38 1075 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 POTEJP0CG39 1038 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 HSPA6P17066 643 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 WASHC4Q2M389 1173 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 CCDC57Q2TAC2 916 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 ATG9AQ7Z3C6 839 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 GPC2Q8N158 579 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 HELBQ8NG08 1087 aaPredicted RBP11.99□□□□□ -0.49
DDX39A-220ENST00000593008 TBC1D16Q8TBP0 767 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 L3MBTL3Q96JM7 780 aaPredicted RBP11.99□□□□□ -0.49
DDX39A-220ENST00000593008 ZNRF3Q9ULT6 936 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 DUOX1Q9NRD9 1551 aa11.99□□□□□ -0.49
DDX39A-220ENST00000593008 WDR90Q96KV7 1748 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 IQCA1LA6NCM1 817 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 SMARCA5O60264 1052 aaPredicted RBP11.98□□□□□ -0.49
DDX39A-220ENST00000593008 CXCL9Q07325 125 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 DOK7Q18PE1 504 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 EAPPQ56P03 285 aaPredicted RBP11.98□□□□□ -0.49
DDX39A-220ENST00000593008 TAF7LQ5H9L4 462 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 RPAP2Q8IXW5 612 aaPredicted RBP11.98□□□□□ -0.49
DDX39A-220ENST00000593008 SMC1BQ8NDV3 1235 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 VPS33BQ9H267 617 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 TAF1DQ9H5J8 278 aaPredicted RBP11.98□□□□□ -0.49
DDX39A-220ENST00000593008 DBNDD1Q9H9R9 158 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 COPRSQ9NQ92 184 aa11.98□□□□□ -0.49
DDX39A-220ENST00000593008 LTBP1Q14766 1721 aa11.97□□□□□ -0.49
DDX39A-220ENST00000593008 YDJCA8MPS7 323 aa11.97□□□□□ -0.49
DDX39A-220ENST00000593008 TAF5LO75529 589 aa11.97□□□□□ -0.49
DDX39A-220ENST00000593008 SURF6O75683 361 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms